ViewGene
Locus Name:
GeneID:
Location:

GeneID:4564
TrivialName: PA14_17540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17540
PAO1 Ortholog Locus:PA3616
Sequence Length:462
Protein Length:153
Start: 1506451
Stop: 1506912
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07004.1|AE004782_2 (AE004782) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 151/153 (98%), Positives = 151/153 (98%)
Sequence:
ATGGCGACCGTGCTCGATACGCCCGTCGCCGTGCGGCGGGCGGCCATGGATCTGCTGGCGCGCCGTGAGCAC
GGGCGCGCCGAGCTTTCCCGCAAGTTGCGCCAGCGTGGCGCGTCTGCCGAGTTGATCGACCCTGCCCTCGAC
CGCCTGGCCGAGGAAGGTCTGCTCGACGAATCCCGCTATCTCGAAAGCTTCATCGCCAGTCGCGCCCGTAGC
GGCCATGGGCCGTTGCGCATCCGTGAGGAACTGGCGCAACGCGGTCTGCCGCGCGCCGATATCGAAAGGGCG
CTGGGTGCCTGCGAGGTCGACTGGAGTGCGCAATTGCGCGAGGTCTGGCGCCGCAAGTTCGCCCGCCTGCCG
CAGGACGCCAGGGAAAAGGCCCAGCAGGGCCGCTTCCTGGCGTACCGGGGTTACTCCATGGAGTCGATCAGC
CGCCTGTTGAACAGTCGCAGCGACGATTGA
Translation:
MATVLDTPVAVRRAAMDLLARREHGRAELSRKLRQRGASAELIDPALDRLAEEGLLDESRYLESFIASRARS
GHGPLRIREELAQRGLPRADIERALGACEVDWSAQLREVWRRKFARLPQDAREKAQQGRFLAYRGYSMESIS
RLLNSRSDD*
AnnotationID:4570GeneID:4564
AnnotatorUID: diggins
Modification Date/Time: 2005-07-01 18:06:47
Gene Name:
Confidence Code:3
GeneProduct:putative recX protein
Cell Localization:(1) Cytoplasmic
Synonyms:recX
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:putative recA-associate protein
Functional Category Confidence Code:5
COGs:pfam02631
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57489.1| (AE016870) recX protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 152

 Score =  214 bits (546), Expect = 1e-55
 Identities = 108/151 (71%), Positives = 126/151 (83%), Gaps = 1/151 (0%)

>gb|AAB16922.1| (U70864) RecA-associated protein [Pseudomonas putida]
          Length = 142

 Score =  178 bits (452), Expect = 8e-45
 Identities = 91/123 (73%), Positives = 105/123 (85%), Gaps = 1/123 (0%)






 
Structural Features:
pfam02631, RecX, RecX family. RecX is a putative bacterial regulatory protein. 
The gene encoding RecX is found downstream of recA, 
and is thought to interact with the RecA protein.
CD-Length = 125 residues,  89.6% aligned
Score = 61.6 bits (149), Expect = 7e-11
Identities = 42/114 (36%), Positives = 65/114 (57%), Gaps = 3/114 (2%)







   
Genomic Context:






   
Comment:


















    ReferenceID:9129




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26271




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31925




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4564_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4564
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6929
                           PA3616_tr
                           translation of PA3616
                           153
                           98.69
                           98.69
                           0
                           753.0
     

     
     
184639
                           gb|AAG07004.1|AE004782_2
                           (AE004782) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           153
                           98.69
                           98.69
                           0
                           753.0
     

     
     
184640
                           dbj|BAA02401.1|
                           (D13090) recA-related protein [Pseudomonas aeruginosa]
                           153
                           96.73
                           96.73
                           0
                           735.0
     

     
     
184643
                           gb|AAN67251.1|AE016352_4
                           (AE016780) recX protein [Pseudomonas putida KT2440]
                           156
                           69.87
                           82.05
                           3
                           537.0
     

     
     
184641
                           gb|AAO57489.1|
                           (AE016870) recX protein [Pseudomonas syringae pv. tomato str. DC3000]
                           155
                           69.67
                           81.29
                           5
                           548.0
     

     






      

          
GC ORFID: 47566How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3616Glimmer Score: 

          
Start: 3447486Stop: 3447025

          
Length: 462


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3616 translation of PA3616Homolog Bit Score 294.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4659 (ORF: BLASTX 219.0), t_PA3616 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCGACCGTGCTCGATACGCCCGTCGCCGTGCGGCGGGCGGCCATGGATCTGCTGGCGCGCCGTGAGCAC 
GGGCGCGCCGAGCTTTCCCGCAAGTTGCGCCAGCGTGGCGCGTCTGCCGAGTTGATCGACCCTGCCCTCGAC 
CGCCTGGCCGAGGAAGGTCTGCTCGACGAATCCCGCTATCTCGAAAGCTTCATCGCCAGTCGCGCCCGTAGC 
GGCCATGGGCCGTTGCGCATCCGTGAGGAACTGGCGCAACGCGGTCTGCCGCGCGCCGATATCGAAAGGGCG 
CTGGGTGCCTGCGAGGTCGACTGGAGTGCGCAATTGCGCGAGGTCTGGCGCCGCAAGTTCGCCCGCCTGCCG 
CAGGACGCCAGGGAAAAGGCCCAGCAGGGCCGCTTCCTGGCGTACCGGGGTTACTCCATGGAGTCGATCAGC 
CGCCTGTTGAACAGTCGCAGCGACGATTGA