ViewGene
Locus Name:
GeneID:
Location:

GeneID:4563
TrivialName: PA14_27490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27490
PAO1 Ortholog Locus:PA2829
Sequence Length:453
Protein Length:150
Start: 2386983
Stop: 2386531
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06217.1|AE004709_10 (AE004709) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 150/150 (100%), Positives = 150/150 (100%)
Sequence:
ATGGACCTGCAGATCGACGACTTCCACAAGGACGCCGCTGGCGGCCTCCTGCTTCTCTACCAGGCGTTTCCG
CGCAAGACCGCGCTCTACGTCGAAGACCTGATCGGCCGCGAGGCGCCGGACGAGTTCGGCCTGCCGAGCAAA
CGTCACCAAAGTTGTCTGGGCGCGTTGCTCTGGCTCGCCGAGGAAGGCTACCTGCGCTTCGCCAACACCATT
CATTACGAGGCTCTCGACCAGGCGGTGCTCAGCGAAAAGGCCTTCCTAAGACTTACCCGTATCGTCCCCCGG
GCCGCGGCGGCGCTGGCCGAGGCGCCGGCCAGCGTGCGCCGCGAACAGGCCAGCCTGGCCAACCAGTTGCGC
CAGGCGCTGGCGCAGGGCGACGGCGAACGCCTGGCCGGGCTGACCCGCCTGCTGTTCGAGGGCAACCTGGGC
GCGCAAGGCGACACAGTTTGA
Translation:
MDLQIDDFHKDAAGGLLLLYQAFPRKTALYVEDLIGREAPDEFGLPSKRHQSCLGALLWLAEEGYLRFANTI
HYEALDQAVLSEKAFLRLTRIVPRAAAALAEAPASVRREQASLANQLRQALAQGDGERLAGLTRLLFEGNLG
AQGDTV*
AnnotationID:4569GeneID:4563
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 15:03:44
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2829
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9127




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26269




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4563
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6928
                           PA2829_tr
                           translation of PA2829
                           150
                           99.99
                           99.99
                           0
                           753.0
     

     
     
184638
                           gb|AAG06217.1|AE004709_10
                           (AE004709) hypothetical protein PA2829 [Pseudomonas aeruginosa PAO1]
                           150
                           99.99
                           99.99
                           0
                           753.0
     

     






      

          
GC ORFID: 47565How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2829Glimmer Score: 

          
Start: 2566944Stop: 2567396

          
Length: 453


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2829 translation of PA2829Homolog Bit Score 294.0

          
Other Homologs:  t_PA2829 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACCTGCAGATCGACGACTTCCACAAGGACGCCGCTGGCGGCCTCCTGCTTCTCTACCAGGCGTTTCCG 
CGCAAGACCGCGCTCTACGTCGAAGACCTGATCGGCCGCGAGGCGCCGGACGAGTTCGGCCTGCCGAGCAAA 
CGTCACCAAAGTTGTCTGGGCGCGTTGCTCTGGCTCGCCGAGGAAGGCTACCTGCGCTTCGCCAACACCATT 
CATTACGAGGCTCTCGACCAGGCGGTGCTCAGCGAAAAGGCCTTCCTAAGACTTACCCGTATCGTCCCCCGG 
GCCGCGGCGGCGCTGGCCGAGGCGCCGGCCAGCGTGCGCCGCGAACAGGCCAGCCTGGCCAACCAGTTGCGC 
CAGGCGCTGGCGCAGGGCGACGGCGAACGCCTGGCCGGGCTGACCCGCCTGCTGTTCGAGGGCAACCTGGGC 
GCGCAAGGCGACACAGTTTGA