ViewGene
Locus Name:
GeneID:
Location:

GeneID:4559
TrivialName: PA14_05630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05630
PAO1 Ortholog Locus:PA0433
Sequence Length:435
Protein Length:144
Start: 499155
Stop: 499589
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03822.1|AE004480_6 (AE004480) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 139/144 (96%), Positives = 142/144 (98%)
Sequence:
ATGCTAGAGTGCGCGGTCATGAGAATCGCTCCCATCTCCCGCTCACCGCTGTTGCAGTGGCTGAGCTTCGCC
CTCTGTGCCTGCGTGCTGGTCAACGCGCTGGCTTGCGGCGTCCTGCACCTGCAGGCGCTGGGAGTGGGCAGC
GACAAAGGGCAGAAGGCCAGCGTCGGGCTGTTCTGCGTCGCCGGTGCCAGCCAATGGCTATCCCTGGATCCC
GACGACGGGTCCGCCGGCGATCCGGTACCGGTCAATCCCCAGTTGCCGGTGAGCTGCCCGATGTGCAGCGCC
CTGGTGCTGTTCGTCGCGCTCGGGGTGATCTGGTCCTGGCGCTTGCAACGGCGACGCCAGGCGCGTTTCCGC
CCGCCCGCCACGCGCGAGCCGGTGCCGCCCCGGTACGTCTGGCCGCCGGCCAACCCGCGCGCTTCCCCCGCC
TGA
Translation:
MLECAVMRIAPISRSPLLQWLSFALCACVLVNALACGVLHLQALGVGSDKGQKASVGLFCVAGASQWLSLDP
DDGSAGDPVPVNPQLPVSCPMCSALVLFVALGVIWSWRLQRRRQARFRPPATREPVPPRYVWPPANPRASPA
*
AnnotationID:4565GeneID:4559
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 09:09:10
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0433
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9119




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26261




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4559
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6924
                           PA0433_tr
                           translation of PA0433
                           144
                           96.52
                           98.61
                           0
                           756.0
     

     
     
184612
                           gb|AAG03822.1|AE004480_6
                           (AE004480) hypothetical protein PA0433 [Pseudomonas aeruginosa PAO1]
                           144
                           96.52
                           98.61
                           0
                           756.0
     

     






      

          
GC ORFID: 47561How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0433Glimmer Score: 

          
Start: 6300497Stop: 6300931

          
Length: 435


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0433 translation of PA0433Homolog Bit Score 295.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCTAGAGTGCGCGGTCATGAGAATCGCTCCCATCTCCCGCTCACCGCTGTTGCAGTGGCTGAGCTTCGCC 
CTCTGTGCCTGCGTGCTGGTCAACGCGCTGGCTTGCGGCGTCCTGCACCTGCAGGCGCTGGGAGTGGGCAGC 
GACAAAGGGCAGAAGGCCAGCGTCGGGCTGTTCTGCGTCGCCGGTGCCAGCCAATGGCTATCCCTGGATCCC 
GACGACGGGTCCGCCGGCGATCCGGTACCGGTCAATCCCCAGTTGCCGGTGAGCTGCCCGATGTGCAGCGCC 
CTGGTGCTGTTCGTCGCGCTCGGGGTGATCTGGTCCTGGCGCTTGCAACGGCGACGCCAGGCGCGTTTCCGC 
CCGCCCGCCACGCGCGAGCCGGTGCCGCCCCGGTACGTCTGGCCGCCGGCCAACCCGCGCGCTTCCCCCGCC 
TGA