ViewGene

Locus Name:
GeneID:
Location:

GeneID:4558
TrivialName: PA14_04100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04100
PAO1 Ortholog Locus:PA0315
Sequence Length:438
Protein Length:145
Start: 368901
Stop: 369338
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03704.1|AE004469_9 (AE004469) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 145/145 (100%), Positives = 145/145 (100%)
Sequence:
ATGAGAGTGACATTGCCTTGCCTCGGTCTAGCCGCCCTGATGTTCGGCGCATCCGCCAGCCTGATGGCTGCC
GACCTGCCTCGGACTAAGGCGCCCGAAGGGGCGAAAGTGTATTTCATCACGCCGGCCGATGGTGCAACCGTC
GACAAGACCTTCACCGTGAAATTCGGCCTGAAAGGCATGGGCGTGGCGCCGGCCGGCGTCGACATGCCGGAT
ACCGGCCACCATCACCTGCTGGTGGACCTGAAGGAGCAGCCGGCGATGAACCTGCCGCTGCCGATGACCGAC
AACATCCGCCACTTCGGCAAGGGCCAGACCGAAACCGAGATCACCCTGCCGCCGGGCAAGCACACCCTGCAA
CTGCTGGTGGGCGACAAGAACCACGTGCCGCTGGAGCCGACCGTGGAGTCGGAGAAGATCACCGTTACCGTC
AAGTGA
Translation:
MRVTLPCLGLAALMFGASASLMAADLPRTKAPEGAKVYFITPADGATVDKTFTVKFGLKGMGVAPAGVDMPD
TGHHHLLVDLKEQPAMNLPLPMTDNIRHFGKGQTETEITLPPGKHTLQLLVGDKNHVPLEPTVESEKITVTV
K*
AnnotationID:4564GeneID:4558
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 12:12:10
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0315
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:9117
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26259
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4558

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6923 PA0315_tr translation of PA0315 145 99.99 99.99 0 755.0
184608 gb|AAG03704.1|AE004469_9 (AE004469) hypothetical protein PA0315 [Pseudomonas aeruginosa PAO1] 145 99.99 99.99 0 755.0
184609 gb|AAO58721.1| (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 145 63.44 82.06 0 514.0
184610 gb|AAN70721.1|AE016715_10 (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440] 158 53.16 67.72 13 422.0
184611 dbj|BAC52010.1| (AP005959) bll6745 [Bradyrhizobium japonicum USDA 110] 210 34.76 43.80 72 330.0
GC ORFID: 47560How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0315Glimmer Score:
Start: 6170243Stop: 6170680
Length: 438
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0315 translation of PA0315Homolog Bit Score 295.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6521 (ORF: BLASTX 210.0), t_PA0315 (ORF: GLIMMER)
GC ORF Sequence
ATGAGAGTGACATTGCCTTGCCTCGGTCTAGCCGCCCTGATGTTCGGCGCATCCGCCAGCCTGATGGCTGCC
GACCTGCCTCGGACTAAGGCGCCCGAAGGGGCGAAAGTGTATTTCATCACGCCGGCCGATGGTGCAACCGTC
GACAAGACCTTCACCGTGAAATTCGGCCTGAAAGGCATGGGCGTGGCGCCGGCCGGCGTCGACATGCCGGAT
ACCGGCCACCATCACCTGCTGGTGGACCTGAAGGAGCAGCCGGCGATGAACCTGCCGCTGCCGATGACCGAC
AACATCCGCCACTTCGGCAAGGGCCAGACCGAAACCGAGATCACCCTGCCGCCGGGCAAGCACACCCTGCAA
CTGCTGGTGGGCGACAAGAACCACGTGCCGCTGGAGCCGACCGTGGAGTCGGAGAAGATCACCGTTACCGTC
AAGTGA