ViewGene
Locus Name:
GeneID:
Location:

GeneID:4555
TrivialName: PA14_23630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23630
PAO1 Ortholog Locus:PA3130
Sequence Length:438
Protein Length:145
Start: 2055894
Stop: 2056331
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06518.1|AE004737_4 (AE004737) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 144/145 (99%), Positives = 144/145 (99%)
Sequence:
ATGAATTGGGACTACGCCGATCCGTTCGTGATCGACCTCAGGGTCCTCACCGAGGACATCGACGGGCTCGGC
CACGCGAACAACGCCGTCTACGTCAGTTGGTTGGAGCGCTGCGCCTGGCGCCACTCGCAGCGGCTGGGCTTG
GACCTGGCCGAGTACCGCCGGCTGGACCGGGCGATGGCGGTGCTGCGCCACGAGATCGACTACCTGGCCGCG
GCCTACGAGGGCGACGAACTGCAACTGGCGACCTGGATCGTCGAGTCCGACCAGCGCCTGCGGATGAACCGG
CGCTTCCAGTTGGTACGCCCGGCGGATGGCGCCACGCTGCTGCGGGCGCAGACCACCTTCGTCTGCATCGAA
CTGTCCAGCGGCAAGCCGAAGCGGATGCCGGCGGAGTTCATCGACGGCTACGGCCAGGCTCTGCTCGCCGGG
GCCTGA
Translation:
MNWDYADPFVIDLRVLTEDIDGLGHANNAVYVSWLERCAWRHSQRLGLDLAEYRRLDRAMAVLRHEIDYLAA
AYEGDELQLATWIVESDQRLRMNRRFQLVRPADGATLLRAQTTFVCIELSSGKPKRMPAEFIDGYGQALLAG
A*
AnnotationID:4561GeneID:4555
AnnotatorUID: diggins
Modification Date/Time: 2005-04-13 08:08:05
Gene Name:
Confidence Code:3
GeneProduct:putative thioesterase
Cell Localization:()
Synonyms:PA3130
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0824
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55685.1| (AE016863) 4-hydroxybenzoyl-CoA thioesterase domain protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 153

 Score =  236 bits (603), Expect = 2e-62
 Identities = 115/141 (81%), Positives = 124/141 (87%)






 
Structural Features:
COG0824, FcbC, Predicted thioesterase
CD-Length = 137 residues,  94.2% aligned
Score =  106 bits (265), Expect = 1e-24
Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 3/132 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9111




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26253




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32391




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4555_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4555
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6919
                           PA3130_tr
                           translation of PA3130
                           145
                           99.31
                           99.31
                           0
                           754.0
     

     
     
184499
                           gb|AAG06518.1|AE004737_4
                           (AE004737) hypothetical protein PA3130 [Pseudomonas aeruginosa PAO1]
                           145
                           99.31
                           99.31
                           0
                           754.0
     

     
     
184500
                           gb|AAN67595.1|AE016389_3
                           (AE016781) conserved hypothetical protein TIGR00051 [Pseudomonas putida KT2440]
                           145
                           84.82
                           91.72
                           1
                           648.0
     

     
     
184501
                           gb|AAO55685.1|
                           (AE016863) 4-hydroxybenzoyl-CoA thioesterase domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           153
                           75.16
                           81.04
                           8
                           596.0
     

     
     
184502
                           emb|CAE28340.1|
                           (BX572602) conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
                           162
                           43.82
                           58.64
                           17
                           384.0
     

     






      

          
GC ORFID: 47557How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3130Glimmer Score: 

          
Start: 2898037Stop: 2897600

          
Length: 438


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3130 translation of PA3130Homolog Bit Score 295.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAATTGGGACTACGCCGATCCGTTCGTGATCGACCTCAGGGTCCTCACCGAGGACATCGACGGGCTCGGC 
CACGCGAACAACGCCGTCTACGTCAGTTGGTTGGAGCGCTGCGCCTGGCGCCACTCGCAGCGGCTGGGCTTG 
GACCTGGCCGAGTACCGCCGGCTGGACCGGGCGATGGCGGTGCTGCGCCACGAGATCGACTACCTGGCCGCG 
GCCTACGAGGGCGACGAACTGCAACTGGCGACCTGGATCGTCGAGTCCGACCAGCGCCTGCGGATGAACCGG 
CGCTTCCAGTTGGTACGCCCGGCGGATGGCGCCACGCTGCTGCGGGCGCAGACCACCTTCGTCTGCATCGAA 
CTGTCCAGCGGCAAGCCGAAGCGGATGCCGGCGGAGTTCATCGACGGCTACGGCCAGGCTCTGCTCGCCGGG 
GCCTGA