ViewGene
Locus Name:
GeneID:
Location:

GeneID:4553
TrivialName: PA14_45980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45980
PAO1 Ortholog Locus:PA1428
Sequence Length:432
Protein Length:143
Start: 4089814
Stop: 4089383
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04817.1|AE004572_5 (AE004572) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 142/143 (99%), Positives = 142/143 (99%)
Sequence:
ATGCACATTCGCAAGCGCGTCGACGCCGACAACACGGCATTGGTCGACCTGTGGGAACGTTCCGTCCGCGCG
ACCCACGACTTTCTCAGTGAAGCGGACATCGTCGAGCTTTACCCACAGGTCCGCGACCTGTACCTGCCGGCC
GTCGAGGTCTGGGTGCTGGTCGACGACGACGGCGTGGCCCAGGGCTTCATTGGCCTGAACCAGACGCATGTC
GAGATGCTCTTCGTCGAACCCGGGCTGCGCGGCCGGGGTATCGGCCGACGCCTGCTCGATCATGCGCGGGCG
ACCTGGCCGCGCCTGAGCGTCGATGTCAACGAGCAGAACCCGCAGGCCTGCGGTTTCTATCGACACTATGGG
TTCCGCCAGACCGGCCGCTCCGCGACCGACTCGGCGGGGCGGCCGTTCCCGCTGCTGCACATGAGCCTCTAG
Translation:
MHIRKRVDADNTALVDLWERSVRATHDFLSEADIVELYPQVRDLYLPAVEVWVLVDDDGVAQGFIGLNQTHV
EMLFVEPGLRGRGIGRRLLDHARATWPRLSVDVNEQNPQACGFYRHYGFRQTGRSATDSAGRPFPLLHMSL*
AnnotationID:4559GeneID:4553
AnnotatorUID: diggins
Modification Date/Time: 2005-05-28 18:06:06
Gene Name:
Confidence Code:3
GeneProduct:putative acetyltransferase
Cell Localization:()
Synonyms:yjaB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam0058
Secondary Functional Category(ies):putative enzyme
EC Number:2.3.1.-
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67687.1|AE016399_4 (AE016781) acetyltransferase, GNAT family [Pseudomonas putida
           KT2440]
          Length = 171

 Score =  178 bits (451), Expect = 9e-45
 Identities = 87/143 (60%), Positives = 103/143 (72%)

>gb|AAL23005.1| (AE008895) putative acetyltransferase [Salmonella typhimurium LT2]
          Length = 145

 Score =  128 bits (321), Expect = 1e-29
 Identities = 64/141 (45%), Positives = 90/141 (63%), Gaps = 1/141 (0%)

>gb|AAO79611.1| (AE016945) putative acetyltransferase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 458

 Score =  127 bits (320), Expect = 1e-29
 Identities = 63/142 (44%), Positives = 90/142 (63%)






 
Structural Features:
pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family.
CD-Length = 82 residues, 100.0% aligned
Score = 54.1 bits (130), Expect = 6e-09
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 12/82 (14%)







   
Genomic Context:






   
Comment:


















    ReferenceID:9107




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26249




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37360




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4553_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4553
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6917
                           PA1428_tr
                           translation of PA1428
                           143
                           99.30
                           99.30
                           0
                           754.0
     

     
     
184412
                           gb|AAG04817.1|AE004572_5
                           (AE004572) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           143
                           99.30
                           99.30
                           0
                           754.0
     

     
     
184414
                           emb|CAE35341.1|
                           (BX640452) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           145
                           57.93
                           68.96
                           2
                           421.0
     

     
     
184415
                           emb|CAE39670.1|
                           (BX640436) conserved hypothetical protein [Bordetella parapertussis]
                           145
                           57.24
                           68.96
                           2
                           417.0
     

     
     
184413
                           gb|AAN67687.1|AE016399_4
                           (AE016781) acetyltransferase, GNAT family [Pseudomonas putida KT2440]
                           171
                           50.87
                           60.23
                           28
                           451.0
     

     






      

          
GC ORFID: 47555How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1428Glimmer Score: 

          
Start: 864095Stop: 864526

          
Length: 432


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1428 translation of PA1428Homolog Bit Score 295.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4770 (ORF: BLASTX 107.0), t_PA1428 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACATTCGCAAGCGCGTCGACGCCGACAACACGGCATTGGTCGACCTGTGGGAACGTTCCGTCCGCGCG 
ACCCACGACTTTCTCAGTGAAGCGGACATCGTCGAGCTTTACCCACAGGTCCGCGACCTGTACCTGCCGGCC 
GTCGAGGTCTGGGTGCTGGTCGACGACGACGGCGTGGCCCAGGGCTTCATTGGCCTGAACCAGACGCATGTC 
GAGATGCTCTTCGTCGAACCCGGGCTGCGCGGCCGGGGTATCGGCCGACGCCTGCTCGATCATGCGCGGGCG 
ACCTGGCCGCGCCTGAGCGTCGATGTCAACGAGCAGAACCCGCAGGCCTGCGGTTTCTATCGACACTATGGG 
TTCCGCCAGACCGGCCGCTCCGCGACCGACTCGGCGGGGCGGCCGTTCCCGCTGCTGCACATGAGCCTCTAG