ViewGene
Locus Name:
GeneID:
Location:

GeneID:4552
TrivialName: PA14_50740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50740
PAO1 Ortholog Locus:PA1053
Sequence Length:465
Protein Length:154
Start: 4508661
Stop: 4508197
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04442.1|AE004537_7 (AE004537) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 154/154 (100%), Positives = 154/154 (100%)
Sequence:
ATGCGCAAGTCTGCCTTGATCGTTGCTTCCTTCACCGCCATGGCCCTGGCTCTTGGCGGCTGCCAATCCAGC
CTCACCGGCGATACCTACAGCCGTGAGGAAGCCCGTACCGTGCAGACTGTACGCATGGGCACCATCCAGGCC
TTGCGCCCGGTCAAGATCGAAGGCACCAAGACCCCGATCGGTTCCATCGCCGGTGCCGGCGTCGGCGGTGTC
GCCGGCAGCGCGGTGGGCGGCGGCAAGGGCAGCTACGTCGCGGCCATCATTGGCGCGGTCGCTGGCGGTCTG
CTGGGCGCGGCTACCGAAGAAGGCCTGACGCGCACCCAGGGCGTCGAGATCACCGTGCGCGAAGACGACGGC
AGCACCCGCGCCTACGTCCAGCAGGTCGACCAGGGCCAGATCTTCCGCGTCGGCGAGCGCGTGCGCATCCTG
ACCGTCAACGGCACCAGCCGCGTCGCTCACTGA
Translation:
MRKSALIVASFTAMALALGGCQSSLTGDTYSREEARTVQTVRMGTIQALRPVKIEGTKTPIGSIAGAGVGGV
AGSAVGGGKGSYVAAIIGAVAGGLLGAATEEGLTRTQGVEITVREDDGSTRAYVQQVDQGQIFRVGERVRIL
TVNGTSRVAH*
AnnotationID:4558GeneID:4552
AnnotatorUID: danlee
Modification Date/Time: 2004-05-19 14:02:05
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1053
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3133
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3133, SlyB, Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
      CD-Length = 154 residues, 100.0% aligned
      Score =  140 bits (355), Expect = 6e-35






   
Genomic Context:






   
Comment:


















    ReferenceID:9105




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26247




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4552
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6916
                           PA1053_tr
                           translation of PA1053
                           154
                           99.99
                           99.99
                           0
                           754.0
     

     
     
184387
                           gb|AAG04442.1|AE004537_7
                           (AE004537) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           154
                           99.99
                           99.99
                           0
                           754.0
     

     
     
184388
                           gb|AAO57571.1|
                           (AE016870) lipoprotein SlyB, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           154
                           83.76
                           94.15
                           0
                           658.0
     

     
     
184389
                           gb|AAN66756.1|AE016304_1
                           (AE016778) outer membrane lipoprotein, putative [Pseudomonas putida KT2440]
                           154
                           80.51
                           90.90
                           0
                           622.0
     

     
     
184395
                           gb|AAD50821.1|AF168687_2
                           (AF168687) outer membrane lipoprotein Pcp [Pectobacterium carotovorum subsp. carotovorum]
                           161
                           43.47
                           57.14
                           13
                           285.0
     

     






      

          
GC ORFID: 47554How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1053Glimmer Score: 

          
Start: 445247Stop: 445711

          
Length: 465


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1053 translation of PA1053Homolog Bit Score 295.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6299 (ORF: BLASTX 256.0), t_PA1053 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCAAGTCTGCCTTGATCGTTGCTTCCTTCACCGCCATGGCCCTGGCTCTTGGCGGCTGCCAATCCAGC 
CTCACCGGCGATACCTACAGCCGTGAGGAAGCCCGTACCGTGCAGACTGTACGCATGGGCACCATCCAGGCC 
TTGCGCCCGGTCAAGATCGAAGGCACCAAGACCCCGATCGGTTCCATCGCCGGTGCCGGCGTCGGCGGTGTC 
GCCGGCAGCGCGGTGGGCGGCGGCAAGGGCAGCTACGTCGCGGCCATCATTGGCGCGGTCGCTGGCGGTCTG 
CTGGGCGCGGCTACCGAAGAAGGCCTGACGCGCACCCAGGGCGTCGAGATCACCGTGCGCGAAGACGACGGC 
AGCACCCGCGCCTACGTCCAGCAGGTCGACCAGGGCCAGATCTTCCGCGTCGGCGAGCGCGTGCGCATCCTG 
ACCGTCAACGGCACCAGCCGCGTCGCTCACTGA