ViewGene
Locus Name:
GeneID:
Location:

GeneID:4550
TrivialName: PA14_12260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12260
PAO1 Ortholog Locus:PA3986
Sequence Length:432
Protein Length:143
Start: 1058202
Stop: 1058633
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07373.1|AE004816_9 (AE004816) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 142/143 (99%), Positives = 142/143 (99%)
Sequence:
ATGGCTGAGCTGCAACGCGCGAGTGTGACGGGAGGTGGGCTGTACGAGAGGCTGCTGCAGCGTCTCGCCCTG
GCTCTGGATGAAGCGGATACGGCCGAGCGCCTGCGTGACGAGCATCCCACGGAGCTTGAGTTGCGTGGTTTG
AGCGAAGCGGAGATGGGGCTGATACGCGCCTATCTCGACCAGGACCTGCACTGGTTGCGCGGCTGGCATGCG
GCCGCCGAGGAGCTGGCGCTGCTCGAGCGCCAGCCCGGCAGGACACCCCGGCCGCCCCGGCCGCAACCGCCG
GCGCCGCGTCGGCACGTCTCGTTGAAACAGCGGCAACTGCTCTGTGCGCTCTGCGGTGCGCCGGTGCAGTGG
AGCAAGGGGCATGGCGTGTTGCCGTGCGGCCATTGCGGCTCGCAACTGTTCCGTTCGGGCAACGACCGCTAG
Translation:
MAELQRASVTGGGLYERLLQRLALALDEADTAERLRDEHPTELELRGLSEAEMGLIRAYLDQDLHWLRGWHA
AAEELALLERQPGRTPRPPRPQPPAPRRHVSLKQRQLLCALCGAPVQWSKGHGVLPCGHCGSQLFRSGNDR*
AnnotationID:4556GeneID:4550
AnnotatorUID: urbach
Modification Date/Time: 2004-09-01 12:12:58
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3986
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9101




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26243




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4550
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6914
                           PA3986_tr
                           translation of PA3986
                           143
                           99.30
                           99.30
                           0
                           757.0
     

     
     
184356
                           gb|AAG07373.1|AE004816_9
                           (AE004816) hypothetical protein PA3986 [Pseudomonas aeruginosa PAO1]
                           143
                           99.30
                           99.30
                           0
                           757.0
     

     






      

          
GC ORFID: 47552How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3986Glimmer Score: 

          
Start: 3895736Stop: 3895305

          
Length: 432


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3986 translation of PA3986Homolog Bit Score 296.0

          
Other Homologs:  t_PA3986 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTGAGCTGCAACGCGCGAGTGTGACGGGAGGTGGGCTGTACGAGAGGCTGCTGCAGCGTCTCGCCCTG 
GCTCTGGATGAAGCGGATACGGCCGAGCGCCTGCGTGACGAGCATCCCACGGAGCTTGAGTTGCGTGGTTTG 
AGCGAAGCGGAGATGGGGCTGATACGCGCCTATCTCGACCAGGACCTGCACTGGTTGCGCGGCTGGCATGCG 
GCCGCCGAGGAGCTGGCGCTGCTCGAGCGCCAGCCCGGCAGGACACCCCGGCCGCCCCGGCCGCAACCGCCG 
GCGCCGCGTCGGCACGTCTCGTTGAAACAGCGGCAACTGCTCTGTGCGCTCTGCGGTGCGCCGGTGCAGTGG 
AGCAAGGGGCATGGCGTGTTGCCGTGCGGCCATTGCGGCTCGCAACTGTTCCGTTCGGGCAACGACCGCTAG