ViewGene
Locus Name:
GeneID:
Location:

GeneID:455
TrivialName: PA14_28920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28920
PAO1 Ortholog Locus:PA2725
Sequence Length:1884
Protein Length:627
Start: 2502773
Stop: 2500890
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06113.1|AE004700_9 (AE004700) probable chaperone [Pseudomonas aeruginosa PAO1]
Identities = 623/627 (99%), Positives = 624/627 (99%)
Sequence:
ATGGCCCTCGGGGCAATATGCTGTGGCCACGACACACGCTGTGAGCGACTATCGATGCCAGGGACTGCACTG
TTCGAAAAGCCACGCTGGTTGCGCGACCTCCTGCGCTTCCTGCCCCTCAAGAGTCAATTCGTCCTCTCCGGG
AACATCCGCGACCTGCAAGCCTGTGAAGTGGTGCCGGGTACGGTCACCGCGCAGAGCTTCAACCAGACCCTC
TGCGACGCCCTGCTGGACGCCGGCTACACCCAGGTGCTGGCCTGGGATCCGCTGGCCGGGTTCCGCGTGCTC
GGCCGGCCGGGCAGCGAGGCGGGCGCCACTCCGCAGGTGCTTCTCGACCTCGGCCTAACCCCGGTGGACGGC
GCCGCGCCGGCCGGCACCGACCTGCTCGGCGCAACCCTGCAACGCCTGGTCAACCGTAGCGGCGAGCCGATC
GCCCTGATCGTCGACTTCGCCTCGCGCCTGGCGGTGCGCAACGACGCCCTGAGCGCCGCCGAGCATCAGTTG
TTCACCCAGGCCCTGGTGCTCTCCCACCAGGCCCGCAGCCGTCCCGCCGGGGAACAGCGCAAACCGTTCTTC
AACAGCGTGCTGTGGGTGGTGGAAAAGGAAGGCGACCTGCCCGACTGGCTGCTGGTGGACAACCCGCGCCTG
CGCCATATCCCGGTGTCGAAGCCCGACCAGCCGGCGCGCCGGGCCCTGGCCCCGGCGCTGCTCCGCGGGCTC
GGCGGCGCGGGCGTCGCCGAGGAGGCCCTGCAACAGGCCGCCGCAACCTTCGTCGAGAACACCGAAGGCCTG
CTGCTCCTCGATCTCAACGCCATCGTCCAACTGGCGCGCGTGGAAGGCCTGGCCATGGAACGCATCGCCGAC
GCCGTGCGCCGCTACAAGGTCGGCGTCACCGAAGACCCCTGGCTGAAGATCGACCGCCAGCGCATCCGCCAG
GCCGACGAGATCGTCCGCCGCCGGGTCAAGGGCCAGCAGCACGCGGTGACCCACATGCTGGACATCGTCAAG
CGCGCGATGACCGGGGTCGGCGCCAGCCGCAAGGGCAACCGCCCGCGCGGCGTGGCCTTCCTCGCCGGGCCC
ACCGGGGTCGGCAAGACCGAGCTGGCGAAGACCGTCACCAGCCTGCTGTTCGGCGACGAGAGCGCCTACATC
CGCTTCGACATGTCCGAGTTCAGCGCCGAGCATGCCGACCAGCGCCTGATCGGCGCGCCGCCCGGCTACGTC
GGCTACGACGTCGGCGGCGAACTGACCAACGCGATCCGCGAAAAACCCTTCAGCGTGGTGCTCTTCGACGAG
ATCGAGAAAGCCCACCCCCGGATCCTCGACAAGTTCCTGCAGATCCTCGACGACGGCGTGCTCACCTCCGGG
CGCGGCGATCGCGTGTACTTCTCCGAGGCGCTGATCGTGTTCACCTCGAACCTGGGCATCTACCGCCAGGGG
GAGAACGGCGAACGGGTCGCCAACGTGCTCCCCGGCGAATCCTTCGAGGCGGTGCAGGGCAAGGTCCACGGC
GAGATCGAGCGCTACTTCAAGCTGGTTCTCAACCGCCCGGAAATCCTCAACCGGATCGGCGAGAACATCATC
GTCTTCGACTTCATCCGCGCCGACGTCGCCGAGCAGATCTTCACCCAGATGGTCGACGGCACCTTCGCTGAC
CTCCGCGAGCAGCGCCTCGTCATCGAGCTGGCCGAAGCGCCGCGCCAGGCGCTGCACGACCTCTGCCTGGGC
GACCTGTCCAACGGCGGCCGCGGCATCCGCAACCAGCTCGAAGCGCGCCTGCTCAACCCGTTGTCGCGAGCA
CTGTTCGACCAGGACGCGCAGCCGGGCGAGCGCTTCCTGATCAGCGCCCTGGACGCCGACGGCCTGACCCTG
GAACGCCGCTGA
Translation:
MALGAICCGHDTRCERLSMPGTALFEKPRWLRDLLRFLPLKSQFVLSGNIRDLQACEVVPGTVTAQSFNQTL
CDALLDAGYTQVLAWDPLAGFRVLGRPGSEAGATPQVLLDLGLTPVDGAAPAGTDLLGATLQRLVNRSGEPI
ALIVDFASRLAVRNDALSAAEHQLFTQALVLSHQARSRPAGEQRKPFFNSVLWVVEKEGDLPDWLLVDNPRL
RHIPVSKPDQPARRALAPALLRGLGGAGVAEEALQQAAATFVENTEGLLLLDLNAIVQLARVEGLAMERIAD
AVRRYKVGVTEDPWLKIDRQRIRQADEIVRRRVKGQQHAVTHMLDIVKRAMTGVGASRKGNRPRGVAFLAGP
TGVGKTELAKTVTSLLFGDESAYIRFDMSEFSAEHADQRLIGAPPGYVGYDVGGELTNAIREKPFSVVLFDE
IEKAHPRILDKFLQILDDGVLTSGRGDRVYFSEALIVFTSNLGIYRQGENGERVANVLPGESFEAVQGKVHG
EIERYFKLVLNRPEILNRIGENIIVFDFIRADVAEQIFTQMVDGTFADLREQRLVIELAEAPRQALHDLCLG
DLSNGGRGIRNQLEARLLNPLSRALFDQDAQPGERFLISALDADGLTLERR*
AnnotationID:464GeneID:455
AnnotatorUID: diggins
Modification Date/Time: 2005-04-05 07:07:43
Gene Name:
Confidence Code:3
GeneProduct:putative chaperone
Cell Localization:()
Synonyms:PA2725
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(9) Chaperones & heat shock proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:913




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18055




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36306




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:455_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:455
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
777
                           PA2725_tr
                           translation of PA2725
                           627
                           99.36
                           99.52
                           0
                           3165.0
     

     
     
33902
                           gb|AAG06113.1|AE004700_9
                           (AE004700) probable chaperone [Pseudomonas aeruginosa PAO1]
                           627
                           99.36
                           99.52
                           0
                           3165.0
     

     
     
33912
                           gb|AAO58847.1|
                           (AE016875) clpB protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           927
                           23.08
                           32.90
                           345
                           423.0
     

     
     
33903
                           gb|AAC07290.1|
                           (AE000733) ATP-dependent Clp protease [Aquifex aeolicus VF5]
                           893
                           22.39
                           34.82
                           349
                           501.0
     

     
     
33904
                           gb|AAD25872.1|AF027500_2
                           (AF027500) ATP-dependent Clp protease regulatory subunit [Aquifex pyrophilus]
                           803
                           22.16
                           33.87
                           348
                           463.0
     

     






      

          
GC ORFID: 43457How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2725Glimmer Score: 

          
Start: 2451153Stop: 2453036

          
Length: 1884


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2725 translation of PA2725Homolog Bit Score 1223.0

          
Other Homologs:  t_PA2725 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCCTCGGGGCAATATGCTGTGGCCACGACACACGCTGTGAGCGACTATCGATGCCAGGGACTGCACTG 
TTCGAAAAGCCACGCTGGTTGCGCGACCTCCTGCGCTTCCTGCCCCTCAAGAGTCAATTCGTCCTCTCCGGG 
AACATCCGCGACCTGCAAGCCTGTGAAGTGGTGCCGGGTACGGTCACCGCGCAGAGCTTCAACCAGACCCTC 
TGCGACGCCCTGCTGGACGCCGGCTACACCCAGGTGCTGGCCTGGGATCCGCTGGCCGGGTTCCGCGTGCTC 
GGCCGGCCGGGCAGCGAGGCGGGCGCCACTCCGCAGGTGCTTCTCGACCTCGGCCTAACCCCGGTGGACGGC 
GCCGCGCCGGCCGGCACCGACCTGCTCGGCGCAACCCTGCAACGCCTGGTCAACCGTAGCGGCGAGCCGATC 
GCCCTGATCGTCGACTTCGCCTCGCGCCTGGCGGTGCGCAACGACGCCCTGAGCGCCGCCGAGCATCAGTTG 
TTCACCCAGGCCCTGGTGCTCTCCCACCAGGCCCGCAGCCGTCCCGCCGGGGAACAGCGCAAACCGTTCTTC 
AACAGCGTGCTGTGGGTGGTGGAAAAGGAAGGCGACCTGCCCGACTGGCTGCTGGTGGACAACCCGCGCCTG 
CGCCATATCCCGGTGTCGAAGCCCGACCAGCCGGCGCGCCGGGCCCTGGCCCCGGCGCTGCTCCGCGGGCTC 
GGCGGCGCGGGCGTCGCCGAGGAGGCCCTGCAACAGGCCGCCGCAACCTTCGTCGAGAACACCGAAGGCCTG 
CTGCTCCTCGATCTCAACGCCATCGTCCAACTGGCGCGCGTGGAAGGCCTGGCCATGGAACGCATCGCCGAC 
GCCGTGCGCCGCTACAAGGTCGGCGTCACCGAAGACCCCTGGCTGAAGATCGACCGCCAGCGCATCCGCCAG 
GCCGACGAGATCGTCCGCCGCCGGGTCAAGGGCCAGCAGCACGCGGTGACCCACATGCTGGACATCGTCAAG 
CGCGCGATGACCGGGGTCGGCGCCAGCCGCAAGGGCAACCGCCCGCGCGGCGTGGCCTTCCTCGCCGGGCCC 
ACCGGGGTCGGCAAGACCGAGCTGGCGAAGACCGTCACCAGCCTGCTGTTCGGCGACGAGAGCGCCTACATC 
CGCTTCGACATGTCCGAGTTCAGCGCCGAGCATGCCGACCAGCGCCTGATCGGCGCGCCGCCCGGCTACGTC 
GGCTACGACGTCGGCGGCGAACTGACCAACGCGATCCGCGAAAAACCCTTCAGCGTGGTGCTCTTCGACGAG 
ATCGAGAAAGCCCACCCCCGGATCCTCGACAAGTTCCTGCAGATCCTCGACGACGGCGTGCTCACCTCCGGG 
CGCGGCGATCGCGTGTACTTCTCCGAGGCGCTGATCGTGTTCACCTCGAACCTGGGCATCTACCGCCAGGGG 
GAGAACGGCGAACGGGTCGCCAACGTGCTCCCCGGCGAATCCTTCGAGGCGGTGCAGGGCAAGGTCCACGGC 
GAGATCGAGCGCTACTTCAAGCTGGTTCTCAACCGCCCGGAAATCCTCAACCGGATCGGCGAGAACATCATC 
GTCTTCGACTTCATCCGCGCCGACGTCGCCGAGCAGATCTTCACCCAGATGGTCGACGGCACCTTCGCTGAC 
CTCCGCGAGCAGCGCCTCGTCATCGAGCTGGCCGAAGCGCCGCGCCAGGCGCTGCACGACCTCTGCCTGGGC 
GACCTGTCCAACGGCGGCCGCGGCATCCGCAACCAGCTCGAAGCGCGCCTGCTCAACCCGTTGTCGCGAGCA 
CTGTTCGACCAGGACGCGCAGCCGGGCGAGCGCTTCCTGATCAGCGCCCTGGACGCCGACGGCCTGACCCTG 
GAACGCCGCTGA