ViewGene
Locus Name:
GeneID:
Location:

GeneID:4549
TrivialName: PA14_21090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21090
PAO1 Ortholog Locus:PA3320
Sequence Length:456
Protein Length:151
Start: 1823789
Stop: 1824244
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06708.1|AE004754_4 (AE004754) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 149/151 (98%), Positives = 149/151 (98%)
Sequence:
ATGCCCAATTATCTGATGGTACTGATGGCAGTTTCGGTGGGCGGCATGGTGGTGCTGCAGGCCGGCAGCAAC
GCCTTGCTCGGGCGCCTGCTCGGCCATCCGCTGAGCGCCAGCCTGACTTCGCTGGGCGTCAGCCTCGGGGCG
GTCTGCCTGGGCCTGCTGCTGGTGCGGGTGCCGCTGCCGGCTACCGCCAGCCTCGGCGGCGCGCCCTGGTGG
AGCTGGCTCGGCGGGCTGTTCGGCGCGGCCTACCTGACGGTGGCGATCCTGGTCGCGCCGCGCCTGGGCGCC
GCCACTTTCATCGCGTGCGTGGTGGCCGGGCAGATGCTGGTCTCGGCGCTCTGCGACCAGTTCGGCTGGGCC
GGTTTCCCGGTGCGCCGTTTGTCCTGGGAGGGCTATCTCGGCCTGGCGCTGGTGGTGGCGGGGGTATTGCTC
CTGCAATGGCGGGGAAGAGCGTGA
Translation:
MPNYLMVLMAVSVGGMVVLQAGSNALLGRLLGHPLSASLTSLGVSLGAVCLGLLLVRVPLPATASLGGAPWW
SWLGGLFGAAYLTVAILVAPRLGAATFIACVVAGQMLVSALCDQFGWAGFPVRRLSWEGYLGLALVVAGVLL
LQWRGRA*
AnnotationID:4555GeneID:4549
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 08:08:04
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3320
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9099




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26241




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32243




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4549_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4549
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6913
                           PA3320_tr
                           translation of PA3320
                           151
                           98.67
                           98.67
                           0
                           758.0
     

     
     
184353
                           gb|AAG06708.1|AE004754_4
                           (AE004754) hypothetical protein PA3320 [Pseudomonas aeruginosa PAO1]
                           151
                           98.67
                           98.67
                           0
                           758.0
     

     
     
184355
                           gb|AAN69209.1|AE016555_7
                           (AE016787) conserved hypothetical protein [Pseudomonas putida KT2440]
                           180
                           34.44
                           47.77
                           33
                           284.0
     

     
     
184354
                           dbj|BAC77726.1|
                           (AB112549) putative protein [Burkholderia glumae]
                           205
                           32.68
                           42.92
                           54
                           295.0
     

     






      

          
GC ORFID: 47551How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3320Glimmer Score: 

          
Start: 3130143Stop: 3129688

          
Length: 456


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3320 translation of PA3320Homolog Bit Score 296.0

          
Other Homologs:  t_PA3320 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCAATTATCTGATGGTACTGATGGCAGTTTCGGTGGGCGGCATGGTGGTGCTGCAGGCCGGCAGCAAC 
GCCTTGCTCGGGCGCCTGCTCGGCCATCCGCTGAGCGCCAGCCTGACTTCGCTGGGCGTCAGCCTCGGGGCG 
GTCTGCCTGGGCCTGCTGCTGGTGCGGGTGCCGCTGCCGGCTACCGCCAGCCTCGGCGGCGCGCCCTGGTGG 
AGCTGGCTCGGCGGGCTGTTCGGCGCGGCCTACCTGACGGTGGCGATCCTGGTCGCGCCGCGCCTGGGCGCC 
GCCACTTTCATCGCGTGCGTGGTGGCCGGGCAGATGCTGGTCTCGGCGCTCTGCGACCAGTTCGGCTGGGCC 
GGTTTCCCGGTGCGCCGTTTGTCCTGGGAGGGCTATCTCGGCCTGGCGCTGGTGGTGGCGGGGGTATTGCTC 
CTGCAATGGCGGGGAAGAGCGTGA