ViewGene
Locus Name:
GeneID:
Location:

GeneID:4548
TrivialName: PA14_27230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27230
PAO1 Ortholog Locus:PA2849
Sequence Length:456
Protein Length:151
Start: 2365985
Stop: 2365530
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06237.1|AE004711_9 (AE004711) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 151/151 (100%), Positives = 151/151 (100%)
Sequence:
ATGTCCCGACTGCCCACCACCCCTTGCGAGCAGCTCAAGCTGGACAACCAGCTGTGCTTCGCCCTGTATTCC
ACCTCGCTGCAGATGACCAAGGTCTACAAGCCCCTGCTGCAAGCGCTCGGCCTCACCTATCCGCAGTACATC
GCCATGCTGGTGCTATGGGAACGCGACGGCCTGACCGTGGGCGAAATCAGCGCACGCATGCTTACCGACCCG
GGATCGCTCACGCCTCTGCTCAAGCGCCTGGAGGGCGAAGGTCTGATTACCCGCACTCGCAGCAGCGAAGAC
GAACGCGTAGTCCTGCTGCGCCTGACCGACAAGGGCCGCGCCCTGCAGCGACAGGCCGAGAGCATTCCCGCC
TGCATCCTGGAGAGTACCGGCCTCGACTTGCCACAGCTGGTCGCCCTCAAGGATGAGCTGCTGGCCCTGCGC
GGCAACCTGCAAGCACCGGACTGA
Translation:
MSRLPTTPCEQLKLDNQLCFALYSTSLQMTKVYKPLLQALGLTYPQYIAMLVLWERDGLTVGEISARMLTDP
GSLTPLLKRLEGEGLITRTRSSEDERVVLLRLTDKGRALQRQAESIPACILESTGLDLPQLVALKDELLALR
GNLQAPD*
AnnotationID:4554GeneID:4548
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 19:07:16
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, MarR family
Cell Localization:()
Synonyms:PA2849
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1846,pfam01047
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67479.1|AE016374_11 (AE016780) transcriptional regulator, MarR family [Pseudomonas
           putida KT2440]
          Length = 151

 Score =  209 bits (533), Expect = 3e-54
 Identities = 104/140 (74%), Positives = 122/140 (87%)

>gb|AAO55288.1| (AE016862) transcriptional regulator, MarR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 157

 Score =  208 bits (530), Expect = 7e-54
 Identities = 100/146 (68%), Positives = 126/146 (86%)

>dbj|BAC46001.1| (AP005937) transcriptional regulatory protein [Bradyrhizobium
           japonicum USDA 110]
          Length = 197

 Score =  162 bits (410), Expect = 6e-40
 Identities = 81/149 (54%), Positives = 107/149 (71%)






 
Structural Features:
COG1846, MarR, Transcriptional regulators [Transcription]

pfam01047, MarR, MarR family.






   
Genomic Context:






   
Comment:


















    ReferenceID:9097




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26239




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36179




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4548_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4548
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6911
                           PA2849_tr
                           translation of PA2849
                           151
                           99.99
                           99.99
                           0
                           757.0
     

     
     
184299
                           gb|AAG06237.1|AE004711_9
                           (AE004711) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           151
                           99.99
                           99.99
                           0
                           757.0
     

     
     
184300
                           gb|AAN67479.1|AE016374_11
                           (AE016780) transcriptional regulator, MarR family [Pseudomonas putida KT2440]
                           151
                           69.53
                           82.11
                           0
                           524.0
     

     
     
184301
                           gb|AAO55288.1|
                           (AE016862) transcriptional regulator, MarR family [Pseudomonas syringae pv. tomato str. DC3000]
                           157
                           63.69
                           80.25
                           6
                           522.0
     

     
     
184305
                           gb|AAM39582.1|
                           (AE012122) transcriptional regulator marR family [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           154
                           50.64
                           66.23
                           4
                           363.0
     

     






      

          
GC ORFID: 47550How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2849Glimmer Score: 

          
Start: 2587942Stop: 2588397

          
Length: 456


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2849 translation of PA2849Homolog Bit Score 296.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7673 (ORF: BLASTX 207.0), t_PA2825 (ORF: BLASTX 115.0)

          
GC ORF Sequence

           
ATGTCCCGACTGCCCACCACCCCTTGCGAGCAGCTCAAGCTGGACAACCAGCTGTGCTTCGCCCTGTATTCC 
ACCTCGCTGCAGATGACCAAGGTCTACAAGCCCCTGCTGCAAGCGCTCGGCCTCACCTATCCGCAGTACATC 
GCCATGCTGGTGCTATGGGAACGCGACGGCCTGACCGTGGGCGAAATCAGCGCACGCATGCTTACCGACCCG 
GGATCGCTCACGCCTCTGCTCAAGCGCCTGGAGGGCGAAGGTCTGATTACCCGCACTCGCAGCAGCGAAGAC 
GAACGCGTAGTCCTGCTGCGCCTGACCGACAAGGGCCGCGCCCTGCAGCGACAGGCCGAGAGCATTCCCGCC 
TGCATCCTGGAGAGTACCGGCCTCGACTTGCCACAGCTGGTCGCCCTCAAGGATGAGCTGCTGGCCCTGCGC 
GGCAACCTGCAAGCACCGGACTGA