ViewGene
Locus Name:
GeneID:
Location:

GeneID:4547
TrivialName: PA14_28430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28430
PAO1 Ortholog Locus:PA2757
Sequence Length:444
Protein Length:147
Start: 2455781
Stop: 2456224
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06145.1|AE004703_11 (AE004703) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 147/147 (100%), Positives = 147/147 (100%)
Sequence:
GTGCAAGGCATCAAGCGCAAACTGGTCTACGTGACCGCCTACGAATTGATCGGGATGAGTATCTCGACCCTG
GGGCTGGCCCTGCTCGCCGGTTCCACGCCCACTACCACCGGCCCCCTGGCGGTGGTGATCACCACCGTCGCG
GTGACCTGGAACTTCATCTACAACTGCCTGTTCGAGTTCTGGGAGCGGCGCCAGGCCGTGCGCGGACGCAGC
ATTGCGCGGCGGGTGGCGCACGCCATCGGCTTCCAGCTGACCCTGGTGGTCTACCTGATCCCGCTGATCGCC
TGGTGGATGGGGATTTCCCTGCTGGAGGCGTTCTGGCTGGACCTGGCGCTTATCGTCCTGATCCCGTGCTAC
ACCTTCCTCTTCAACTGGGCCTTCGATCGCCTGTTCGGCCTCCCGACTTCCGCGTTGCCGGCCGGCGAGGCG
GCCTCCGTCTGA
Translation:
MQGIKRKLVYVTAYELIGMSISTLGLALLAGSTPTTTGPLAVVITTVAVTWNFIYNCLFEFWERRQAVRGRS
IARRVAHAIGFQLTLVVYLIPLIAWWMGISLLEAFWLDLALIVLIPCYTFLFNWAFDRLFGLPTSALPAGEA
ASV*
AnnotationID:4553GeneID:4547
AnnotatorUID: diggins
Modification Date/Time: 2005-04-05 13:01:41
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA2757
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam05232
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam05232, BTP, Bacterial Transmembrane Pair family
CD-Length = 68 residues,  95.6% aligned
Score = 74.3 bits (181), Expect = 5e-15
Identities = 34/68 (50%), Positives = 46/68 (67%)






   
Genomic Context:






   
Comment:


















    ReferenceID:15122




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26237




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36267




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type: (text/plain)







    
Data:4547_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4547
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6910
                           PA2757_tr
                           translation of PA2757
                           147
                           99.99
                           99.99
                           0
                           757.0
     

     
     
184296
                           gb|AAG06145.1|AE004703_11
                           (AE004703) hypothetical protein PA2757 [Pseudomonas aeruginosa PAO1]
                           147
                           99.31
                           99.99
                           0
                           754.0
     

     
     
184297
                           gb|AAN67864.1|AE016418_4
                           (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
                           147
                           66.66
                           81.63
                           5
                           536.0
     

     
     
184298
                           gb|AAN69049.1|AE016537_7
                           (AE016786) conserved hypothetical protein [Pseudomonas putida KT2440]
                           147
                           39.45
                           58.50
                           4
                           280.0
     

     






      

          
GC ORFID: 47549How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2757Glimmer Score: 

          
Start: 2498145Stop: 2497702

          
Length: 444


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2757 translation of PA2757Homolog Bit Score 296.0

          
Other Homologs:  t_PA2757 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCAAGGCATCAAGCGCAAACTGGTCTACGTGACCGCCTACGAATTGATCGGGATGAGTATCTCGACCCTG 
GGGCTGGCCCTGCTCGCCGGTTCCACGCCCACTACCACCGGCCCCCTGGCGGTGGTGATCACCACCGTCGCG 
GTGACCTGGAACTTCATCTACAACTGCCTGTTCGAGTTCTGGGAGCGGCGCCAGGCCGTGCGCGGACGCAGC 
ATTGCGCGGCGGGTGGCGCACGCCATCGGCTTCCAGCTGACCCTGGTGGTCTACCTGATCCCGCTGATCGCC 
TGGTGGATGGGGATTTCCCTGCTGGAGGCGTTCTGGCTGGACCTGGCGCTTATCGTCCTGATCCCGTGCTAC 
ACCTTCCTCTTCAACTGGGCCTTCGATCGCCTGTTCGGCCTCCCGACTTCCGCGTTGCCGGCCGGCGAGGCG 
GCCTCCGTCTGA