ViewGene
Locus Name:
GeneID:
Location:

GeneID:4546
TrivialName: PA14_38340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38340
PAO1 Ortholog Locus:PA2024
Sequence Length:423
Protein Length:140
Start: 3417655
Stop: 3418077
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05412.1|AE004629_1 (AE004629) probable ring-cleaving dioxygenase [Pseudomonas aeruginosa PAO1]
Identities = 139/139 (100%), Positives = 139/139 (100%)
Sequence:
ATGTCCCCCACCCTCACCCACCTGGCGCTGCACGTCCCCGACCTCGACGCCTGCATCGCCTTCTACGAAACC
TTCTGCGGCATGCGGGTGATCCACCGGCGCCCCGGCAAAGGCTCGCAGATCGTCTGGATGGCCGAACCCGGC
CAGGAACAACGCTTCATCTTCGTCATCATGCCCGGCGGCCAGCCGCGCAACCTGGCCAGCGACGATTACAGT
CATTTCGGCTTCGCCCTCTCCAGCCGCGCCGCGGTAGACGATCTGGCGCGCCGCGCCGAGGCCGCCGGCTGC
CTGGTCTGGGCGCCGCGCGACGAGCCCTATCCGGTCGGCTACTACTGCGGCCTGCGCGATCCCGCGGGCAAC
TATGTGGAGTTCAGTTACGGCCAGCCGCTGGGGCCGGGTTCCGAGGCACTACCGATTCTCTGA
Translation:
MSPTLTHLALHVPDLDACIAFYETFCGMRVIHRRPGKGSQIVWMAEPGQEQRFIFVIMPGGQPRNLASDDYS
HFGFALSSRAAVDDLARRAEAAGCLVWAPRDEPYPVGYYCGLRDPAGNYVEFSYGQPLGPGSEALPIL*
AnnotationID:4552GeneID:4546
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 21:09:55
Gene Name:
Confidence Code:3
GeneProduct:putative ring-cleaving dioxygenase
Cell Localization:()
Synonyms:PA2024
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(3) Antibiotic resistance and susceptibility
Alternate Gene Product Name:putative bleomycin resistance protein
Functional Category Confidence Code:5
COGs:pfam00903
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00903, Glyoxalase, Glyoxalase/Bleomycin 
resistance protein/Dioxygenase superfamily
CD-Length = 120 residues, 100.0% aligned
Score = 59.3 bits (143), Expect = 2e-10
Identities = 31/121 (25%), Positives = 46/121 (38%), Gaps = 1/121 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9093




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26235




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32675




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4546_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4546
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6909
                           PA2024_tr
                           translation of PA2024
                           140
                           99.28
                           99.28
                           0
                           755.0
     

     
     
184295
                           gb|AAG05412.1|AE004629_1
                           (AE004629) probable ring-cleaving dioxygenase [Pseudomonas aeruginosa PAO1]
                           140
                           99.28
                           99.28
                           0
                           755.0
     

     






      

          
GC ORFID: 47548How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2024Glimmer Score: 

          
Start: 1536255Stop: 1535833

          
Length: 423


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2024 translation of PA2024Homolog Bit Score 296.0

          
Other Homologs:  t_PA2024 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCCCACCCTCACCCACCTGGCGCTGCACGTCCCCGACCTCGACGCCTGCATCGCCTTCTACGAAACC 
TTCTGCGGCATGCGGGTGATCCACCGGCGCCCCGGCAAAGGCTCGCAGATCGTCTGGATGGCCGAACCCGGC 
CAGGAACAACGCTTCATCTTCGTCATCATGCCCGGCGGCCAGCCGCGCAACCTGGCCAGCGACGATTACAGT 
CATTTCGGCTTCGCCCTCTCCAGCCGCGCCGCGGTAGACGATCTGGCGCGCCGCGCCGAGGCCGCCGGCTGC 
CTGGTCTGGGCGCCGCGCGACGAGCCCTATCCGGTCGGCTACTACTGCGGCCTGCGCGATCCCGCGGGCAAC 
TATGTGGAGTTCAGTTACGGCCAGCCGCTGGGGCCGGGTTCCGAGGCACTACCGATTCTCTGA