ViewGene
Locus Name:
GeneID:
Location:

GeneID:4545
TrivialName: PA14_53700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53700
PAO1 Ortholog Locus:PA0817
Sequence Length:426
Protein Length:141
Start: 4762434
Stop: 4762009
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04206.1|AE004517_1 (AE004517) probable ring-cleaving dioxygenase [Pseudomonas aeruginosa PAO1]
Identities = 138/141 (97%), Positives = 139/141 (98%)
Sequence:
ATGAGCCTGATGCCCTTCCACCTCGCCATCCCCGTCCACGACCTGCCGGCCGCCCGGCGCTTTTACGGCGAG
GTCTTCGGCCTGAGCGAAGGCCGCTCCGCCGAGCACTGGGTCGACTTCGACTTCTTCGGCCACCAGTTGGTC
ATCCACCAGCATCCGCAGACCGATTCCCAGCGCCACGCCGGCAGCAACCCGGTGGACGGTCACGACGTGCCG
GTGCCGCACTTCGGCGTGGTCCTCGCATGGGACGACTGGCACGCCCTGGCCGAACGCCTGAAGCAGCGCGGC
ACCCACTTCGTGATCGAGCCCTACATCCGCTTCAAGGGCCAGGTCGGCGAGCAGGCCACGCTGTTCCTCTTC
GACCCCTGCGGCAACGCGCTGGAGTTCAAGAGCTTCCGCGACATGGACCAGTTGTTCGCCAAGTGA
Translation:
MSLMPFHLAIPVHDLPAARRFYGEVFGLSEGRSAEHWVDFDFFGHQLVIHQHPQTDSQRHAGSNPVDGHDVP
VPHFGVVLAWDDWHALAERLKQRGTHFVIEPYIRFKGQVGEQATLFLFDPCGNALEFKSFRDMDQLFAK*
AnnotationID:4551GeneID:4545
AnnotatorUID: danlee
Modification Date/Time: 2004-04-20 17:05:43
Gene Name:
Confidence Code:3
GeneProduct:probable ring-cleaving dioxygenase
Cell Localization:()
Synonyms:PA0817
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3565
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3565, Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
       CD-Length = 138 residues, 100.0% aligned
       Score =  215 bits (550), Expect = 2e-57






   
Genomic Context:






   
Comment:


















    ReferenceID:9091




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26233




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4545
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6908
                           PA0817_tr
                           translation of PA0817
                           141
                           97.87
                           98.58
                           0
                           757.0
     

     
     
184285
                           gb|AAG04206.1|AE004517_1
                           (AE004517) probable ring-cleaving dioxygenase [Pseudomonas aeruginosa PAO1]
                           141
                           97.87
                           98.58
                           0
                           757.0
     

     
     
184286
                           gb|AAO56712.1|
                           (AE016867) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           141
                           77.30
                           85.81
                           0
                           607.0
     

     
     
184290
                           gb|AAC46261.1|
                           (AF006000) unknown [Bordetella pertussis]
                           145
                           57.24
                           69.65
                           6
                           448.0
     

     
     
184289
                           emb|CAE40532.1|
                           (BX640411) probable dioxygenase [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           145
                           57.24
                           69.65
                           6
                           448.0
     

     






      

          
GC ORFID: 47547How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0817Glimmer Score: 

          
Start: 191473Stop: 191898

          
Length: 426


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0817 translation of PA0817Homolog Bit Score 296.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7299 (ORF: BLASTX 244.0), t_PA0817 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCTGATGCCCTTCCACCTCGCCATCCCCGTCCACGACCTGCCGGCCGCCCGGCGCTTTTACGGCGAG 
GTCTTCGGCCTGAGCGAAGGCCGCTCCGCCGAGCACTGGGTCGACTTCGACTTCTTCGGCCACCAGTTGGTC 
ATCCACCAGCATCCGCAGACCGATTCCCAGCGCCACGCCGGCAGCAACCCGGTGGACGGTCACGACGTGCCG 
GTGCCGCACTTCGGCGTGGTCCTCGCATGGGACGACTGGCACGCCCTGGCCGAACGCCTGAAGCAGCGCGGC 
ACCCACTTCGTGATCGAGCCCTACATCCGCTTCAAGGGCCAGGTCGGCGAGCAGGCCACGCTGTTCCTCTTC 
GACCCCTGCGGCAACGCGCTGGAGTTCAAGAGCTTCCGCGACATGGACCAGTTGTTCGCCAAGTGA