ViewGene

Locus Name:
GeneID:
Location:

GeneID:4543
TrivialName: PA14_61270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61270
PAO1 Ortholog Locus:PA4630
Sequence Length:444
Protein Length:147
Start: 5469860
Stop: 5470303
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08018.1|AE004877_5 (AE004877) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 145/147 (98%), Positives = 145/147 (98%)
Sequence:
ATGCCCTCACACGACCTGAAACGACTCGCCCGCCATCACATCGAGCTGTCCTGGAACAAGGGCCGCATGGCG
TTGGTGGAGCAGTTGCACAGCAAGGATTTCCTCTACAAAAGCTCGTTCATCGGCCATCCCCTGGATACCGCC
GGCTATATCCGCCTGCTGCAGGACATCCGCACGGCGATGCCGGACCTGGAGGTCGTGGTCGAAGACTGCATC
GGCGAGGAACGCAAGGTGTTCACCTGGAGCACGCTGATCGGCACCATCGTCCGGCCGACCCTGGGCTATCCG
GCCAGCGACAAGGTGCTGAGCATTTCCGCGATGGGCTTCTGGGTGTTCAACCCGCAGGGCCAGTTGCAGGAG
CTGTGCACCATGTTCGACATGGAGAGCTTTCGCGCCCAGCTGGGACTGCAGACCCGACCCTTCGCGGAAAAA
GCGCTGCCCTAG
Translation:
MPSHDLKRLARHHIELSWNKGRMALVEQLHSKDFLYKSSFIGHPLDTAGYIRLLQDIRTAMPDLEVVVEDCI
GEERKVFTWSTLIGTIVRPTLGYPASDKVLSISAMGFWVFNPQGQLQELCTMFDMESFRAQLGLQTRPFAEK
ALP*
AnnotationID:4549GeneID:4543
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 13:01:44
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4630
Cell Localization Confidence Code:4
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:9087
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26229
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31592
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4543_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4543

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6905 PA4630_tr translation of PA4630 147 98.63 98.63 0 760.0
184180 gb|AAG08018.1|AE004877_5 (AE004877) hypothetical protein PA4630 [Pseudomonas aeruginosa PAO1] 147 98.63 98.63 0 760.0
GC ORFID: 47545How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4630Glimmer Score:
Start: 4733540Stop: 4733983
Length: 444
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA4630 translation of PA4630Homolog Bit Score 297.0
Other Homologs: t_PA4630 (ORF: GLIMMER)
GC ORF Sequence
ATGCCCTCACACGACCTGAAACGACTCGCCCGCCATCACATCGAGCTGTCCTGGAACAAGGGCCGCATGGCG
TTGGTGGAGCAGTTGCACAGCAAGGATTTCCTCTACAAAAGCTCGTTCATCGGCCATCCCCTGGATACCGCC
GGCTATATCCGCCTGCTGCAGGACATCCGCACGGCGATGCCGGACCTGGAGGTCGTGGTCGAAGACTGCATC
GGCGAGGAACGCAAGGTGTTCACCTGGAGCACGCTGATCGGCACCATCGTCCGGCCGACCCTGGGCTATCCG
GCCAGCGACAAGGTGCTGAGCATTTCCGCGATGGGCTTCTGGGTGTTCAACCCGCAGGGCCAGTTGCAGGAG
CTGTGCACCATGTTCGACATGGAGAGCTTTCGCGCCCAGCTGGGACTGCAGACCCGACCCTTCGCGGAAAAA
GCGCTGCCCTAG