ViewGene
Locus Name:
GeneID:
Location:

GeneID:4542
TrivialName: PA14_20960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20960
PAO1 Ortholog Locus:PA3332
Sequence Length:426
Protein Length:141
Start: 1804967
Stop: 1804542
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06720.1|AE004755_7 (AE004755) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 141/141 (100%), Positives = 141/141 (100%)
Sequence:
ATGAATGCCAAGGAAATTCTCGTCCACAGCCTGCGCCTCCTGGAAAACGGCGATGCCCGTGGCTGGTGCGAC
CTGTTCCATCCGGAAGGCGTACTCGAATTCCCCTACGCCCCGCCGGGCTGGAAGACCCGCTTCGAGGGCCGC
GAAACCATCTGGGCGCACATGCGCCTGTTTCCCGAGCACCTGACCGTGCGCTTCACCGACGTGCAGTTCTAC
GAGACCGCCGACCCCGACCTGGCCATCGGCGAATTCCATGGCGACGGCGTGGCCACCGTTTCCGGCGGCAAG
CTGGCGCAGGACTACATCTCGGTGCTGCGCACCCGCGACGGACAGATCCTGCTCTACCGCGACTTCTGGAAT
CCGCTGCGGCACCTCGAGGCCCTGGGCGGGGTCGAGGCCGCCGCCAAGATCGTCCAGGGAGCCTGA
Translation:
MNAKEILVHSLRLLENGDARGWCDLFHPEGVLEFPYAPPGWKTRFEGRETIWAHMRLFPEHLTVRFTDVQFY
ETADPDLAIGEFHGDGVATVSGGKLAQDYISVLRTRDGQILLYRDFWNPLRHLEALGGVEAAAKIVQGA*
AnnotationID:4548GeneID:4542
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 09:09:02
Gene Name:
Confidence Code:3
GeneProduct:putativ isomerase
Cell Localization:()
Synonyms:PA3332
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3631
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3631, Ketosteroid isomerase-related protein
CD-Length = 133 residues,  97.7% aligned
Score =  115 bits (290), Expect = 1e-27
Identities = 40/132 (30%), Positives = 54/132 (40%), Gaps = 3/132 (2%)







   
Genomic Context:






   
Comment:


















    ReferenceID:9085




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26227




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32232




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4542_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4542
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6904
                           PA3332_tr
                           translation of PA3332
                           141
                           99.99
                           99.99
                           0
                           760.0
     

     
     
184179
                           gb|AAG06720.1|AE004755_7
                           (AE004755) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           141
                           99.99
                           99.99
                           0
                           760.0
     

     






      

          
GC ORFID: 47544How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3332Glimmer Score: 

          
Start: 3148965Stop: 3149390

          
Length: 426


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3332 translation of PA3332Homolog Bit Score 297.0

          
Other Homologs:  t_PA3332 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATGCCAAGGAAATTCTCGTCCACAGCCTGCGCCTCCTGGAAAACGGCGATGCCCGTGGCTGGTGCGAC 
CTGTTCCATCCGGAAGGCGTACTCGAATTCCCCTACGCCCCGCCGGGCTGGAAGACCCGCTTCGAGGGCCGC 
GAAACCATCTGGGCGCACATGCGCCTGTTTCCCGAGCACCTGACCGTGCGCTTCACCGACGTGCAGTTCTAC 
GAGACCGCCGACCCCGACCTGGCCATCGGCGAATTCCATGGCGACGGCGTGGCCACCGTTTCCGGCGGCAAG 
CTGGCGCAGGACTACATCTCGGTGCTGCGCACCCGCGACGGACAGATCCTGCTCTACCGCGACTTCTGGAAT 
CCGCTGCGGCACCTCGAGGCCCTGGGCGGGGTCGAGGCCGCCGCCAAGATCGTCCAGGGAGCCTGA