ViewGene
Locus Name:
GeneID:
Location:

GeneID:4541
TrivialName: PA14_21650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21650
PAO1 Ortholog Locus:PA3276
Sequence Length:423
Protein Length:140
Start: 1877635
Stop: 1878057
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06664.1|AE004750_2 (AE004750) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 140/140 (100%), Positives = 140/140 (100%)
Sequence:
GTGGAGTCTGAATCCATCGTCTATGGCTGCATCCGCGACTGGCCGGGCGATTCGATGGAGCGGCGCATGCGT
CGTGCCGCCAACCGCCGCGTGCTGGACAGCCTGCCGGGCGGCGAGGCCTGGCCGTTCCTCGGACGCGAGATG
TTCAGCCGCTGCGAGCAGTCCGGGGCCGGGCTCTACCAGACCCAGATCATCCACTTCGGTGCCAGCTACCAG
GCCATCGAGTACGAGTGGAGCCTGTGGGTCGAGCAGTTCGAGGCGTTGCTCAGGCGCCTCTACTGGGCCAGC
GCGGTGGTCCACCTGGAGACCGAAGTGAACGGCAGCCATACCTTTCGCTGGGAGTCCGAGCGTGGCTTCCAT
ACCCCCCAGGAGAGCGACCTGCAGGTCCGCTGCGCCTGGGAGCGGGAGGGCGGGCGGCGGTGA
Translation:
MESESIVYGCIRDWPGDSMERRMRRAANRRVLDSLPGGEAWPFLGREMFSRCEQSGAGLYQTQIIHFGASYQ
AIEYEWSLWVEQFEALLRRLYWASAVVHLETEVNGSHTFRWESERGFHTPQESDLQVRCAWEREGGRR*
AnnotationID:4547GeneID:4541
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 18:06:00
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3276
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15120




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26225




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4541
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6903
                           PA3276_tr
                           translation of PA3276
                           140
                           99.99
                           99.99
                           0
                           763.0
     

     
     
184178
                           gb|AAG06664.1|AE004750_2
                           (AE004750) hypothetical protein PA3276 [Pseudomonas aeruginosa PAO1]
                           140
                           99.28
                           99.99
                           0
                           760.0
     

     






      

          
GC ORFID: 47543How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3276Glimmer Score: 

          
Start: 3076296Stop: 3075874

          
Length: 423


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3276 translation of PA3276Homolog Bit Score 298.0

          
Other Homologs:  t_PA3276 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGAGTCTGAATCCATCGTCTATGGCTGCATCCGCGACTGGCCGGGCGATTCGATGGAGCGGCGCATGCGT 
CGTGCCGCCAACCGCCGCGTGCTGGACAGCCTGCCGGGCGGCGAGGCCTGGCCGTTCCTCGGACGCGAGATG 
TTCAGCCGCTGCGAGCAGTCCGGGGCCGGGCTCTACCAGACCCAGATCATCCACTTCGGTGCCAGCTACCAG 
GCCATCGAGTACGAGTGGAGCCTGTGGGTCGAGCAGTTCGAGGCGTTGCTCAGGCGCCTCTACTGGGCCAGC 
GCGGTGGTCCACCTGGAGACCGAAGTGAACGGCAGCCATACCTTTCGCTGGGAGTCCGAGCGTGGCTTCCAT 
ACCCCCCAGGAGAGCGACCTGCAGGTCCGCTGCGCCTGGGAGCGGGAGGGCGGGCGGCGGTGA