ViewGene
Locus Name:
GeneID:
Location:

GeneID:4539
TrivialName: PA14_55410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55410
PAO1 Ortholog Locus:
Sequence Length:1179
Protein Length:392
Start: 4931810
Stop: 4930632
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04077.1|AE004504_1 (AE004504) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 180/398 (45%), Positives = 241/398 (60%), Gaps = 37/398 (9%)
Sequence:
ATGTACAAGCGCTCTCTGATCGCTGCCTCGCTGAGCGTGGCCGCCCTCGTATCCGCCCAAGCCATGGCCGAC
ATCAACGGCGGTGGCGCCACCCTGCCGCAACAGCTGTACCAGGAGCCCGGCGTCCTGACCGCCGGCTTTGCC
GCCTACATCGGCGTAGGCAGTGGCAACGGCAAGGCGGCCTTCCTGAACAACGACTACACCAAGTTCGTCGCC
GGCACCACCAACAAGAACGTGCATTGGGCTGGTAGCGACTCCAAACTGAGCAAGACCAACGAAACCAACCCC
TATCTGAGCGCCCATGGCTCCGCCTGGGGTCCGCTGATCCAGGTGCCGTCGGTAGCCACTTCTGTCGCTCTG
CCGTTCAACAAGTCAGGTAGCAACGCCGTCAACTTCGCAGACGTGAACACCCTTTGCGGTGTCTTCTCCGGC
CGTCTGACCGATTGGAGTCAGATTCCTGGCTCGGGCCGTAGCGGCGCCATCACAGTGGTCTACCGTTCCGAG
AGCAGCGGCACCACCGAACTGTTCACCCGCTTCCTCAACGCCTCCTGCTCCAGCACCCTCGAAGGTGGCACC
TTCGCCATCACCACCAGCTTCGGTAGCAGCTTCTCCGGCGGCCTGCCGGCTGGCGCCGTATCGGCCCAGGGC
AGCCAGGCCGTGATGAATGCGCTCAACGCCGCCCAAGGCCGCATCACCTACATGAGCCCGGACTTCGCCGCG
CCGACCCTGGCCGGTCTCGACGACGCCACCAAGGTCGCCCAGGTTCGCGGCGTATCCCCGGCGCCGGCCAAC
GTTTCGGCGGCCATCGGCGCCGTTACTCCGCCGACTACTGCCCAGCGTTCCGATCCGAACAACTGGGTACCG
GTCTTCGCTGCCACCGCCAACCCCAACGACCCGAGCGTGCGTCCGTATCCGACCAGCGGCTACCCGATCCTC
GGCTTCACCAACCTGATCTTCAGCCAGTGCTACGCCAACGCCACCCAGACCCAGCAGGTGCGCGACTTCTTC
ACCCGTCACTACGGCGCCACCGCCAACAACGACACCGCGATCACCAACCATCGCTTCGTGCCGCTGCCGGCT
TCCTGGAAGCTTGCCGTACGCCAGTCGTTCCTGACCTCCACCAACAACTTGTACATCGGCCATTCCAACGTC
TGCAACGGCATCGGCCGTCCGCTCTAA
Translation:
MYKRSLIAASLSVAALVSAQAMADINGGGATLPQQLYQEPGVLTAGFAAYIGVGSGNGKAAFLNNDYTKFVA
GTTNKNVHWAGSDSKLSKTNETNPYLSAHGSAWGPLIQVPSVATSVALPFNKSGSNAVNFADVNTLCGVFSG
RLTDWSQIPGSGRSGAITVVYRSESSGTTELFTRFLNASCSSTLEGGTFAITTSFGSSFSGGLPAGAVSAQG
SQAVMNALNAAQGRITYMSPDFAAPTLAGLDDATKVAQVRGVSPAPANVSAAIGAVTPPTTAQRSDPNNWVP
VFAATANPNDPSVRPYPTSGYPILGFTNLIFSQCYANATQTQQVRDFFTRHYGATANNDTAITNHRFVPLPA
SWKLAVRQSFLTSTNNLYIGHSNVCNGIGRPL*
AnnotationID:4545GeneID:4539
AnnotatorUID: danlee
Modification Date/Time: 2006-03-29 13:01:59
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|68344426|gb|AAY92032.1|  phosphate ABC transporter, periplasmic phosphate-binding protein, 
putative [Pseudomonas fluorescens Pf-5]
 gi|70730127|ref|YP_259866.1|  phosphate ABC transporter, periplasmic phosphate-binding protein, 
putative [Pseudomonas fluorescens Pf-5]
Length=392

 Score =  567 bits (1462),  Expect = 2e-160
 Identities = 293/397 (73%), Positives = 332/397 (83%), Gaps = 10/397 (2%)

gi|68344427|gb|AAY92033.1|  conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
 gi|70730128|ref|YP_259867.1|  hypothetical protein PFL_2760 [Pseudomonas fluorescens Pf-5]
Length=392

 Score =  404 bits (1038),  Expect = 3e-111
 Identities = 208/396 (52%), Positives = 269/396 (67%), Gaps = 10/396 (2%)

gi|84322887|ref|ZP_00970965.1|  COG0226: ABC-type phosphate transport system, periplasmic component 
[Pseudomonas aeruginosa 2192]
Length=368

 Score =  303 bits (777),  Expect = 6e-81
 Identities = 181/398 (45%), Positives = 245/398 (61%), Gaps = 37/398 (9%)

gi|84316742|ref|ZP_00965207.1|  COG0226: ABC-type phosphate transport system, periplasmic component 
[Pseudomonas aeruginosa C3719]
Length=368

 Score =  299 bits (766),  Expect = 1e-79
 Identities = 181/398 (45%), Positives = 242/398 (60%), Gaps = 37/398 (9%)

gi|9946569|gb|AAG04077.1|  hypothetical protein PA0688 [Pseudomonas aeruginosa PAO1]
 gi|12644228|sp|P35482|PPBL_PSEAE  Alkaline phosphatase L precursor (Low molecular weight phosphatase) 
(L-AP)
 gi|15595885|ref|NP_249379.1|  hypothetical protein PA0688 [Pseudomonas aeruginosa PAO1]
 gi|2921855|gb|AAC04870.1|  alkaline phosphatase [Pseudomonas aeruginosa]
Length=368

 Score =  298 bits (762),  Expect = 3e-79
 Identities = 180/398 (45%), Positives = 241/398 (60%), Gaps = 37/398 (9%)






 
Structural Features:
COG0226, PstS, ABC-type phosphate transport system, periplasmic 
component [Inorganic ion transport and metabolism]
   CD-Length = 318 residues,  86.2% aligned
   Score = 75.1 bits (184), Expect = 3e-14







   
Genomic Context:






   
Comment:
Identity to PA0688 only 45%.


















    ReferenceID:9079




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26221




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4539
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6897
                           PA0688_tr
                           translation of PA0688
                           399
                           45.11
                           60.40
                           38
                           801.0
     

     
     
184121
                           gb|AAG04077.1|AE004504_1
                           (AE004504) hypothetical protein PA0688 [Pseudomonas aeruginosa PAO1]
                           399
                           45.11
                           60.40
                           38
                           801.0
     

     
     
184122
                           gb|AAC04870.1|
                           (AF047381) alkaline phosphatase [Pseudomonas aeruginosa]
                           399
                           45.11
                           60.40
                           38
                           801.0
     

     
     
6898
                           PA0689_tr
                           translation of PA0689
                           403
                           38.21
                           53.84
                           44
                           655.0
     

     
     
184123
                           gb|AAG04078.1|AE004504_2
                           (AE004504) hypothetical protein PA0689 [Pseudomonas aeruginosa PAO1]
                           403
                           38.21
                           53.84
                           44
                           655.0
     

     






      

          
GC ORFID: 47541How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0688Glimmer Score: 

          
Start: 22097Stop: 23275

          
Length: 1179


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0688 translation of PA0688Homolog Bit Score 298.0

          
Other Homologs:  t_PA0689 (ORF: BLASTX 244.0), t_PA0688 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTACAAGCGCTCTCTGATCGCTGCCTCGCTGAGCGTGGCCGCCCTCGTATCCGCCCAAGCCATGGCCGAC 
ATCAACGGCGGTGGCGCCACCCTGCCGCAACAGCTGTACCAGGAGCCCGGCGTCCTGACCGCCGGCTTTGCC 
GCCTACATCGGCGTAGGCAGTGGCAACGGCAAGGCGGCCTTCCTGAACAACGACTACACCAAGTTCGTCGCC 
GGCACCACCAACAAGAACGTGCATTGGGCTGGTAGCGACTCCAAACTGAGCAAGACCAACGAAACCAACCCC 
TATCTGAGCGCCCATGGCTCCGCCTGGGGTCCGCTGATCCAGGTGCCGTCGGTAGCCACTTCTGTCGCTCTG 
CCGTTCAACAAGTCAGGTAGCAACGCCGTCAACTTCGCAGACGTGAACACCCTTTGCGGTGTCTTCTCCGGC 
CGTCTGACCGATTGGAGTCAGATTCCTGGCTCGGGCCGTAGCGGCGCCATCACAGTGGTCTACCGTTCCGAG 
AGCAGCGGCACCACCGAACTGTTCACCCGCTTCCTCAACGCCTCCTGCTCCAGCACCCTCGAAGGTGGCACC 
TTCGCCATCACCACCAGCTTCGGTAGCAGCTTCTCCGGCGGCCTGCCGGCTGGCGCCGTATCGGCCCAGGGC 
AGCCAGGCCGTGATGAATGCGCTCAACGCCGCCCAAGGCCGCATCACCTACATGAGCCCGGACTTCGCCGCG 
CCGACCCTGGCCGGTCTCGACGACGCCACCAAGGTCGCCCAGGTTCGCGGCGTATCCCCGGCGCCGGCCAAC 
GTTTCGGCGGCCATCGGCGCCGTTACTCCGCCGACTACTGCCCAGCGTTCCGATCCGAACAACTGGGTACCG 
GTCTTCGCTGCCACCGCCAACCCCAACGACCCGAGCGTGCGTCCGTATCCGACCAGCGGCTACCCGATCCTC 
GGCTTCACCAACCTGATCTTCAGCCAGTGCTACGCCAACGCCACCCAGACCCAGCAGGTGCGCGACTTCTTC 
ACCCGTCACTACGGCGCCACCGCCAACAACGACACCGCGATCACCAACCATCGCTTCGTGCCGCTGCCGGCT 
TCCTGGAAGCTTGCCGTACGCCAGTCGTTCCTGACCTCCACCAACAACTTGTACATCGGCCATTCCAACGTC 
TGCAACGGCATCGGCCGTCCGCTCTAA