ViewGene
Locus Name:
GeneID:
Location:

GeneID:4538
TrivialName: PA14_07990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07990
PAO1 Ortholog Locus:PA0614
Sequence Length:450
Protein Length:149
Start: 688080
Stop: 688529
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04003.1|AE004497_10 (AE004497) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 148/149 (99%), Positives = 148/149 (99%)
Sequence:
GTGAAGCACCGGAACCCGGCCCTGGCGCCGGGTTTTTTATTGCCCGGGAAAACGTTCGTGCGGACGTGCCCG
GCGCTGCCTGCCAAGGAGGGACCCATGGGCAACGAACCGCAGACACTGACGGAAATGCCGCTCTGGGTACTG
ATCCTGCTCGCCGCGCTGGGCGGCGTCAGCGGCGAGATGTGGCGTGCCGACAAGGCCGGTCTCGGCGGCTGG
GCCTTGTTGCGGCGCCTGGCGCTGCGCTCCGGCGCGTCGATCGTCTGCGGCGTGGCGGTGATGCTGCTGGCG
TTGGCTTGCGGCGCCGCGCTGCTGTTCGCCGCGGCGCTGGGCAGCCTGACCGCCGCGGCCGGCGCGGAGATC
GCAGTCGGTCTCTACGAACGCTGGGCCGCCCGGCGCCTGGGGGTTTGCGAGCTGCCCGAGGAACAGTCGGGC
GACCGTGGCCCCCATTGA
Translation:
MKHRNPALAPGFLLPGKTFVRTCPALPAKEGPMGNEPQTLTEMPLWVLILLAALGGVSGEMWRADKAGLGGW
ALLRRLALRSGASIVCGVAVMLLALACGAALLFAAALGSLTAAAGAEIAVGLYERWAARRLGVCELPEEQSG
DRGPH*
AnnotationID:4544GeneID:4538
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 12:12:56
Gene Name:
Confidence Code:3
GeneProduct:putative holin
Cell Localization:()
Synonyms:hol
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68648.1|AE016494_8 (AE016785) pyocin R2_PP, holin [Pseudomonas putida KT2440]
          Length = 115

 Score =  135 bits (341), Expect = 6e-32
 Identities = 60/115 (52%), Positives = 89/115 (77%), Gaps = 1/115 (0%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15118




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26219




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4538
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6896
                           PA0614_tr
                           translation of PA0614
                           149
                           99.32
                           99.32
                           0
                           764.0
     

     
     
184117
                           gb|AAG04003.1|AE004497_10
                           (AE004497) hypothetical protein PA0614 [Pseudomonas aeruginosa PAO1]
                           149
                           98.65
                           99.32
                           0
                           761.0
     

     
     
184118
                           dbj|BAA83151.1|
                           (AB030825) holin [Pseudomonas aeruginosa]
                           149
                           77.85
                           77.85
                           32
                           589.0
     

     
     
184119
                           dbj|BAA83136.1|
                           (AB030826) holin [Pseudomonas aeruginosa]
                           152
                           72.36
                           73.02
                           40
                           547.0
     

     
     
184120
                           gb|AAN68648.1|AE016494_8
                           (AE016785) pyocin R2_PP, holin [Pseudomonas putida KT2440]
                           149
                           40.26
                           59.73
                           34
                           342.0
     

     






      

          
GC ORFID: 47540How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0614Glimmer Score: 

          
Start: 6489423Stop: 6489872

          
Length: 450


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0614 translation of PA0614Homolog Bit Score 298.0

          
Other Homologs:  t_PA0614 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAAGCACCGGAACCCGGCCCTGGCGCCGGGTTTTTTATTGCCCGGGAAAACGTTCGTGCGGACGTGCCCG 
GCGCTGCCTGCCAAGGAGGGACCCATGGGCAACGAACCGCAGACACTGACGGAAATGCCGCTCTGGGTACTG 
ATCCTGCTCGCCGCGCTGGGCGGCGTCAGCGGCGAGATGTGGCGTGCCGACAAGGCCGGTCTCGGCGGCTGG 
GCCTTGTTGCGGCGCCTGGCGCTGCGCTCCGGCGCGTCGATCGTCTGCGGCGTGGCGGTGATGCTGCTGGCG 
TTGGCTTGCGGCGCCGCGCTGCTGTTCGCCGCGGCGCTGGGCAGCCTGACCGCCGCGGCCGGCGCGGAGATC 
GCAGTCGGTCTCTACGAACGCTGGGCCGCCCGGCGCCTGGGGGTTTGCGAGCTGCCCGAGGAACAGTCGGGC 
GACCGTGGCCCCCATTGA