ViewGene
Locus Name:
GeneID:
Location:

GeneID:4537
TrivialName: PA14_06710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06710
PAO1 Ortholog Locus:PA0515
Sequence Length:453
Protein Length:150
Start: 586466
Stop: 586014
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03904.1|AE004488_8 (AE004488) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 150/150 (100%), Positives = 150/150 (100%)
Sequence:
ATGGACGACCTCTCCCGCCGCCTCCTCGCCCGCTACCAGAAAGGCCTGCCGATCTGCGCGGAACCCTATCGG
CGGATGGCCGAGACCCTGGGTTGCAGCGAAGCCGAGGTGCTCGAACGGCTGCGTCGCCTGGAAGCCGACGGC
GCGTTGTCGCGGGTCGGCCCGGTGCTCCGCCACCAACGCGCCGGGGCCAGCACCCTGGCTGCCCTGGCGGTG
CCCGAGGAGCGTCTGCAACGGGTCGCCGAGCGCATCAGCCAGTACGCCGAGGTCAACCACAACTACCAGCGC
GAACACCGCTACAACCTGTGGTTCGTGCTCACCGCCGGCGACCGCGCGCAACTCGACCGGGTACTGGCGGAG
ATCGCCGCCGACACCGGCCTGCAACCCCTCGACCTGCCGATGCAGGAAGCCTACTGCATCGACCTCGCGTTT
CCCCTGGAGGCCAGCCGATGA
Translation:
MDDLSRRLLARYQKGLPICAEPYRRMAETLGCSEAEVLERLRRLEADGALSRVGPVLRHQRAGASTLAALAV
PEERLQRVAERISQYAEVNHNYQREHRYNLWFVLTAGDRAQLDRVLAEIAADTGLQPLDLPMQEAYCIDLAF
PLEASR*
AnnotationID:4543GeneID:4537
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 12:12:17
Gene Name:
Confidence Code:3
GeneProduct:heme d1 biosynthesis protein NirD
Cell Localization:()
Synonyms:nirD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):transcriptional regulator
EC Number:1.7.1.4
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAA90579.1| (Z50198) NirD protein [Pseudomonas stutzeri]
          Length = 152

 Score =  207 bits (528), Expect = 1e-53
 Identities = 102/146 (69%), Positives = 116/146 (79%)

>gb|AAG20102.1| (AE005089) heme biosynthesis protein; NirD [Halobacterium sp.
           NRC-1]
          Length = 345

 Score =  141 bits (355), Expect = 1e-33
 Identities = 70/146 (47%), Positives = 94/146 (64%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9075




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26217




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33823




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4537_cdd.html


    		




 
URL:

















    ReferenceID:35307




  
Author/Investigator(s):
        Kawasaki S, Arai H, Kodama T, Igarashi Y.





  
Title:
        Gene cluster for dissimilatory nitrite reductase (nir) from Pseudomonas aeruginosa: sequencing and identification of a locus for heme d1 biosynthesis.




  
PubMed:
        8982003


MedLine:
        




    
Source:
J Bacteriol. 1997 Jan;179(1):235-42.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8982003









           
Homologs By Global Alignment 

           

       



     
Gene ID:4537
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6894
                           PA0515_tr
                           translation of PA0515
                           150
                           99.99
                           99.99
                           0
                           762.0
     

     
     
184107
                           gb|AAG03904.1|AE004488_8
                           (AE004488) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           150
                           99.99
                           99.99
                           0
                           762.0
     

     
     
184108
                           dbj|BAA12677.1|
                           (D84475) NirD [Pseudomonas aeruginosa]
                           150
                           99.99
                           99.99
                           0
                           762.0
     

     
     
184109
                           emb|CAA90579.1|
                           (Z50198) NirD protein [Pseudomonas stutzeri]
                           153
                           67.32
                           77.12
                           4
                           523.0
     

     
     
184116
                           emb|CAA90581.1|
                           (Z50198) NirG protein [Pseudomonas stutzeri]
                           152
                           44.73
                           60.52
                           7
                           305.0
     

     






      

          
GC ORFID: 47539How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0515Glimmer Score: 

          
Start: 6387808Stop: 6387356

          
Length: 453


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0515 translation of PA0515Homolog Bit Score 298.0

          
Other Homologs:  t_PA0513 (ORF: BLASTX 120.0), t_PA0515 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACGACCTCTCCCGCCGCCTCCTCGCCCGCTACCAGAAAGGCCTGCCGATCTGCGCGGAACCCTATCGG 
CGGATGGCCGAGACCCTGGGTTGCAGCGAAGCCGAGGTGCTCGAACGGCTGCGTCGCCTGGAAGCCGACGGC 
GCGTTGTCGCGGGTCGGCCCGGTGCTCCGCCACCAACGCGCCGGGGCCAGCACCCTGGCTGCCCTGGCGGTG 
CCCGAGGAGCGTCTGCAACGGGTCGCCGAGCGCATCAGCCAGTACGCCGAGGTCAACCACAACTACCAGCGC 
GAACACCGCTACAACCTGTGGTTCGTGCTCACCGCCGGCGACCGCGCGCAACTCGACCGGGTACTGGCGGAG 
ATCGCCGCCGACACCGGCCTGCAACCCCTCGACCTGCCGATGCAGGAAGCCTACTGCATCGACCTCGCGTTT 
CCCCTGGAGGCCAGCCGATGA