ViewGene
Locus Name:
GeneID:
Location:

GeneID:4536
TrivialName: PA14_01150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01150
PAO1 Ortholog Locus:PA0094
Sequence Length:435
Protein Length:144
Start: 113027
Stop: 112593
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03484.1|AE004448_3 (AE004448) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 144/144 (100%), Positives = 144/144 (100%)
Sequence:
GTGACGCTCTATCGCCTCCACGAAGCCGATCTCGAGATTCCCGATGCCTGGCAGGACCAGAGCATCAACATC
TTCAAGCTCCCCGCCAGCGGCCCCGCCCGCGAAGCCAGTTTCGTCATCAGCCGCGACGCCAGCCAGGGCGAC
GCGCCGTTCGCCGACTATGTCGCCCGCCAACTGGAAAACGCCGAGAAGCAATTGCCCGGCTTCAAGCTGCAC
AAGCGCTGGGACATCAACATCCACGGCCACGCCGCCGTGCTCCTCGACTACCAGTGGCAGCGCGAGGGCCGC
GACCTGATGCTGCGCCAGGTATTCATCGAGCGCCGCCCGGCGGTGCTGATCACCACCCTGACCACCACCCCG
GCTGACCTGCCGCACCACGAGCCGGCCTGGAAGCAGGCGATGCAGACCCTGGTCCCGCGCCCGACCCCTAGC
TGA
Translation:
MTLYRLHEADLEIPDAWQDQSINIFKLPASGPAREASFVISRDASQGDAPFADYVARQLENAEKQLPGFKLH
KRWDINIHGHAAVLLDYQWQREGRDLMLRQVFIERRPAVLITTLTTTPADLPHHEPAWKQAMQTLVPRPTPS
*
AnnotationID:4542GeneID:4536
AnnotatorUID: danlee
Modification Date/Time: 2006-02-02 13:01:54
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0094
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG5435
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
99% aligned with COG5435, Uncharacterized conserved protein [Function unknown]






   
Genomic Context:






   
Comment:


















    ReferenceID:15116




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26215




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4536
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6893
                           PA0094_tr
                           translation of PA0094
                           144
                           99.99
                           99.99
                           0
                           763.0
     

     
     
184106
                           gb|AAG03484.1|AE004448_3
                           (AE004448) hypothetical protein PA0094 [Pseudomonas aeruginosa PAO1]
                           144
                           99.30
                           99.99
                           0
                           760.0
     

     






      

          
GC ORFID: 47538How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0094Glimmer Score: 

          
Start: 5914366Stop: 5913932

          
Length: 435


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0094 translation of PA0094Homolog Bit Score 298.0

          
Other Homologs:  t_PA0094 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGACGCTCTATCGCCTCCACGAAGCCGATCTCGAGATTCCCGATGCCTGGCAGGACCAGAGCATCAACATC 
TTCAAGCTCCCCGCCAGCGGCCCCGCCCGCGAAGCCAGTTTCGTCATCAGCCGCGACGCCAGCCAGGGCGAC 
GCGCCGTTCGCCGACTATGTCGCCCGCCAACTGGAAAACGCCGAGAAGCAATTGCCCGGCTTCAAGCTGCAC 
AAGCGCTGGGACATCAACATCCACGGCCACGCCGCCGTGCTCCTCGACTACCAGTGGCAGCGCGAGGGCCGC 
GACCTGATGCTGCGCCAGGTATTCATCGAGCGCCGCCCGGCGGTGCTGATCACCACCCTGACCACCACCCCG 
GCTGACCTGCCGCACCACGAGCCGGCCTGGAAGCAGGCGATGCAGACCCTGGTCCCGCGCCCGACCCCTAGC 
TGA