ViewGene
Locus Name:
GeneID:
Location:

GeneID:4535
TrivialName: PA14_56700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56700
PAO1 Ortholog Locus:PA4360
Sequence Length:474
Protein Length:157
Start: 5051746
Stop: 5051273
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07748.1|AE004852_1 (AE004852) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 157/157 (100%), Positives = 157/157 (100%)
Sequence:
CTGCGCCTGCAGGTCAAGCAACTGCAGGAGAAACTCGGCAGCCAGGAACGCCAGCAGGCCGATGTGAGCAAC
CAGTTCGGCGGCCAGGGCAAACGCCTCGATCAACTGGCCAGCGATCTCAAGGCCCAGCAGGAAAGCGCGGCG
CAACTGGTCGCGCAACTGGACGGCAAGCTGCAGACACTGGCCGCCGAACAGGAGAAGCTGAAAGCCCTGCAG
GTCGAACTGGGCAAGACCAACGAGCAACTCAAGGCCCTCGGCGGCGATGTCGCGGCGCTGAAGAAGCAGGGC
AACCCGAGCCAGACGATCAAGGGTATCCAGGACGACCTGCTGGTATTGCGCAGCCAGCTCGACAATCGCCCG
GCCCAGGGCGGCAATACCGCCGAGTTCGACGCCTTCCGCACCCAGGTGATGCGCAACATCAACACCCTCCAG
GCCCAGGTGCAGAACCTGCAGCAGCAGCTCAATACCCGCTGA
Translation:
MRLQVKQLQEKLGSQERQQADVSNQFGGQGKRLDQLASDLKAQQESAAQLVAQLDGKLQTLAAEQEKLKALQ
VELGKTNEQLKALGGDVAALKKQGNPSQTIKGIQDDLLVLRSQLDNRPAQGGNTAEFDAFRTQVMRNINTLQ
AQVQNLQQQLNTR*
AnnotationID:4541GeneID:4535
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 06:06:50
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4360
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15114




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26213




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4535
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6892
                           PA4360_tr
                           translation of PA4360
                           157
                           99.36
                           99.99
                           0
                           762.0
     

     
     
184103
                           gb|AAG07748.1|AE004852_1
                           (AE004852) hypothetical protein PA4360 [Pseudomonas aeruginosa PAO1]
                           157
                           99.36
                           99.99
                           0
                           763.0
     

     
     
184105
                           gb|AAN66544.1|AE016283_3
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           186
                           41.93
                           60.75
                           39
                           361.0
     

     
     
184104
                           gb|AAO57809.1|
                           (AE016871) conserved domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           289
                           26.98
                           36.67
                           132
                           364.0
     

     






      

          
GC ORFID: 47537How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4360Glimmer Score: 

          
Start: 4315422Stop: 4314949

          
Length: 474


          
Start Codon: CTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4360 translation of PA4360Homolog Bit Score 298.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene2068 (ORF: BLASTX 264.0), t_PA4360 (ORF: GLIMMER)

          
GC ORF Sequence

           
CTGCGCCTGCAGGTCAAGCAACTGCAGGAGAAACTCGGCAGCCAGGAACGCCAGCAGGCCGATGTGAGCAAC 
CAGTTCGGCGGCCAGGGCAAACGCCTCGATCAACTGGCCAGCGATCTCAAGGCCCAGCAGGAAAGCGCGGCG 
CAACTGGTCGCGCAACTGGACGGCAAGCTGCAGACACTGGCCGCCGAACAGGAGAAGCTGAAAGCCCTGCAG 
GTCGAACTGGGCAAGACCAACGAGCAACTCAAGGCCCTCGGCGGCGATGTCGCGGCGCTGAAGAAGCAGGGC 
AACCCGAGCCAGACGATCAAGGGTATCCAGGACGACCTGCTGGTATTGCGCAGCCAGCTCGACAATCGCCCG 
GCCCAGGGCGGCAATACCGCCGAGTTCGACGCCTTCCGCACCCAGGTGATGCGCAACATCAACACCCTCCAG 
GCCCAGGTGCAGAACCTGCAGCAGCAGCTCAATACCCGCTGA