ViewGene
Locus Name:
GeneID:
Location:

GeneID:4534
TrivialName: PA14_17990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17990
PAO1 Ortholog Locus:PA3580
Sequence Length:471
Protein Length:156
Start: 1545469
Stop: 1545939
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06968.1|AE004778_12 (AE004778) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 155/156 (99%), Positives = 155/156 (99%)
Sequence:
ATGACCCCTGCCATCGACCTGCTGAAAAAGGCCCGCGCCGAGCACAAGGTGCTCAGCTACAGCCACGACCCC
AAGGCACCTTCCTATGGCCTGGAGGCCGCGGAAAAGCTCGGCCTGGACCCGCAGCGGGTGTTCAAGACGCTG
CTCGCCGCCACGGAGAAGGGCGAGCTGCTGGTGGCGGTGGTGCCGGTGATCGGCAGTCTCGACCTGAAGGCC
CTGGCCCATGCGGCGGGGGCGAAGAAGGCCGACATGGCCGATCCGCAGGCGGCGCAGCGGGCCACCGGCTAC
CTGGTGGGCGGGATCAGCCCGCTGGGGCAGAAGAAGCGCCTGCGTACCTTCATCGATGAAAGCGCGCGGCAG
TACCCGAGCATCCATGTCAGCGCAGGACGGCGCGGGCTGGAAGTGGAGCTGGCGGCCGAGGTGCTGGCCCAG
CTGACCCAGGGTTCGTTCGCCGCCATCGGCCGCGAATGA
Translation:
MTPAIDLLKKARAEHKVLSYSHDPKAPSYGLEAAEKLGLDPQRVFKTLLAATEKGELLVAVVPVIGSLDLKA
LAHAAGAKKADMADPQAAQRATGYLVGGISPLGQKKRLRTFIDESARQYPSIHVSAGRRGLEVELAAEVLAQ
LTQGSFAAIGRE*
AnnotationID:4540GeneID:4534
AnnotatorUID: diggins
Modification Date/Time: 2005-07-05 05:05:47
Gene Name:
Confidence Code:3
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:ybaK
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:putative transcriptional regulatory protein
Functional Category Confidence Code:5
COGs:pfam04073,cd00002
Secondary Functional Category(ies):transcriptional regulators
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57622.1| (AE016871) ybaK/ebsC protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 156

 Score =  243 bits (621), Expect = 2e-64
 Identities = 125/156 (80%), Positives = 140/156 (89%)

>gb|AAN79079.1|AE016756_262 (AE016756) Protein ybaK [Escherichia coli CFT073]
          Length = 159

 Score =  167 bits (423), Expect = 2e-41
 Identities = 86/157 (54%), Positives = 112/157 (71%), Gaps = 2/157 (1%)

>emb|CAB51450.1| (AL939111) putative transcriptional regulatory protein
           [Streptomyces coelicolor A3(2)]
          Length = 169

 Score =  166 bits (420), Expect = 4e-41
 Identities = 92/154 (59%), Positives = 109/154 (70%), Gaps = 1/154 (0%)







 
Structural Features:
pfam04073, YbaK, YbaK / prolyl-tRNA synthetases associated domain.
CD-Length = 143 residues, 100.0% aligned
Score =  151 bits (382), Expect = 8e-38
Identities = 76/144 (52%), Positives = 98/144 (68%), Gaps = 1/144 (0%)

cd00002, YbaK, protein family related to YbaK Protein From 
H. Influenzae (HI1434)
CD-Length = 148 residues, 100.0% aligned
Score =  134 bits (339), Expect = 1e-32
Identities = 56/152 (36%), Positives = 81/152 (53%), Gaps = 4/152 (2%)







   
Genomic Context:






   
Comment:


















    ReferenceID:9069




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26211




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31962




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4534_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4534
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6891
                           PA3580_tr
                           translation of PA3580
                           156
                           99.35
                           99.35
                           0
                           762.0
     

     
     
184058
                           gb|AAG06968.1|AE004778_12
                           (AE004778) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           156
                           99.35
                           99.35
                           0
                           762.0
     

     
     
184059
                           gb|AAB57802.1|
                           (U49666) orfX; similar to S. typhimurium Orf1, E. faecalis EbsC, and H. influenzae ORF 1434 [Pseudomonas aeruginosa]
                           156
                           99.35
                           99.35
                           0
                           762.0
     

     
     
184060
                           gb|AAN66702.1|AE016298_6
                           (AE016778) conserved hypothetical protein TIGR00011 [Pseudomonas putida KT2440]
                           156
                           82.05
                           91.66
                           0
                           647.0
     

     
     
184061
                           gb|AAO57622.1|
                           (AE016871) ybaK/ebsC protein [Pseudomonas syringae pv. tomato str. DC3000]
                           156
                           80.12
                           89.74
                           0
                           621.0
     

     






      

          
GC ORFID: 47536How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3580Glimmer Score: 

          
Start: 3408467Stop: 3407997

          
Length: 471


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3580 translation of PA3580Homolog Bit Score 298.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6261 (ORF: BLASTX 246.0), t_PA3580 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCCTGCCATCGACCTGCTGAAAAAGGCCCGCGCCGAGCACAAGGTGCTCAGCTACAGCCACGACCCC 
AAGGCACCTTCCTATGGCCTGGAGGCCGCGGAAAAGCTCGGCCTGGACCCGCAGCGGGTGTTCAAGACGCTG 
CTCGCCGCCACGGAGAAGGGCGAGCTGCTGGTGGCGGTGGTGCCGGTGATCGGCAGTCTCGACCTGAAGGCC 
CTGGCCCATGCGGCGGGGGCGAAGAAGGCCGACATGGCCGATCCGCAGGCGGCGCAGCGGGCCACCGGCTAC 
CTGGTGGGCGGGATCAGCCCGCTGGGGCAGAAGAAGCGCCTGCGTACCTTCATCGATGAAAGCGCGCGGCAG 
TACCCGAGCATCCATGTCAGCGCAGGACGGCGCGGGCTGGAAGTGGAGCTGGCGGCCGAGGTGCTGGCCCAG 
CTGACCCAGGGTTCGTTCGCCGCCATCGGCCGCGAATGA