ViewGene
Locus Name:
GeneID:
Location:

GeneID:4533
TrivialName: PA14_20360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20360
PAO1 Ortholog Locus:PA3380
Sequence Length:459
Protein Length:152
Start: 1751797
Stop: 1752255
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06768.1|AE004759_15 (AE004759) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 150/152 (98%), Positives = 150/152 (98%)
Sequence:
ATGACCGCCTTGCATTCCGATCCCACCATCGCCGCACGACAGCGCTGGATGGGCGTGCTCGCCCGCGCCCGT
CGCGAGGAGCTGGACGCCCATGCGGACGCCCTGCGCGATGCCGACTATCACCTGCTGCGCGCCGCCGAGACC
GGCATGACCCTGGTGCGCGGACGCATGGGCGGCACCGGCAGCCCGTTCAACTTCGGCGAGATGACCGTGACC
CGCTGCGTGGTCCGCCTCGCTGACGGACGTACCGGCTACAGCTATGTCGCCGGGCGCGACAAGCGCCACGCC
GAACTGGCCGCCCTGGCCGACGCGCACCTGCAGGGCGCCGATGCGGCGGCCTGGCAGGCGCGCCTGATCGAA
CCGCTGGCCCGCACCCAGGCCGAGCGCCGCGCCGCCCAGGAGGCGGAAATCGCCACTACCAAGGTGGAGTTC
TTCACCCTGGTCCGAGGAGAAGATTGA
Translation:
MTALHSDPTIAARQRWMGVLARARREELDAHADALRDADYHLLRAAETGMTLVRGRMGGTGSPFNFGEMTVT
RCVVRLADGRTGYSYVAGRDKRHAELAALADAHLQGADAAAWQARLIEPLARTQAERRAAQEAEIATTKVEF
FTLVRGED*
AnnotationID:4539GeneID:4533
AnnotatorUID: danlee
Modification Date/Time: 2005-07-29 14:02:10
Gene Name:phnG
Confidence Code:3
GeneProduct:putative phosphonate metabolism protein PhnG
Cell Localization:()
Synonyms:PA3380
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam06754,COG3624
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56064.1| (AE016865) phosphonate metabolism protein PhnG [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 154

 Score =  219 bits (557), Expect = 5e-57
 Identities = 112/154 (72%), Positives = 123/154 (79%), Gaps = 5/154 (3%)

>emb|CAD31343.1| (AL672114) PUTATIVE C-P LYASE SUBUNIT PHNJ PROTEIN PHOSPHONATE
           METABOLISM [Mesorhizobium loti]
          Length = 151

 Score =  138 bits (348), Expect = 9e-33
 Identities = 74/143 (51%), Positives = 96/143 (67%), Gaps = 2/143 (1%)

>gb|AAN83531.1|AE016771_42 (AE016771) PhnG protein [Escherichia coli CFT073]
          Length = 150

 Score =  129 bits (323), Expect = 7e-30
 Identities = 72/151 (47%), Positives = 98/151 (64%), Gaps = 4/151 (2%)








 
Structural Features:
pfam06754, PhnG, Phosphonate metabolism protein PhnG.
CD-Length = 147 residues, 100.0% aligned
Score =  182 bits (463), Expect = 2e-47
Identities = 94/147 (63%), Positives = 109/147 (74%), Gaps = 2/147 (1%)

COG3624, PhnG, Uncharacterized enzyme of phosphonate metabolism 
[Inorganic ion transport and metabolism]
CD-Length = 151 residues,  98.7% aligned
Score =  173 bits (439), Expect = 1e-44
Identities = 93/149 (62%), Positives = 106/149 (71%), Gaps = 4/149 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9067




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26209




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32182




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4533_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4533
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6890
                           PA3380_tr
                           translation of PA3380
                           152
                           98.68
                           98.68
                           0
                           763.0
     

     
     
184037
                           gb|AAG06768.1|AE004759_15
                           (AE004759) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           152
                           98.68
                           98.68
                           0
                           763.0
     

     
     
184038
                           gb|AAO56064.1|
                           (AE016865) phosphonate metabolism protein PhnG [Pseudomonas syringae pv. tomato str. DC3000]
                           157
                           71.33
                           78.34
                           8
                           561.0
     

     
     
184040
                           dbj|BAB54656.1|
                           (AP003015) phosphonate metabolism protein; PhnG [Mesorhizobium loti]
                           156
                           48.07
                           60.25
                           6
                           332.0
     

     
     
184039
                           emb|CAD31343.1|
                           (AL672114) PUTATIVE C-P LYASE SUBUNIT PHNJ PROTEIN PHOSPHONATE METABOLISM [Mesorhizobium loti]
                           156
                           47.43
                           61.53
                           9
                           342.0
     

     






      

          
GC ORFID: 47535How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3380Glimmer Score: 

          
Start: 3202135Stop: 3201677

          
Length: 459


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3380 translation of PA3380Homolog Bit Score 298.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1220 (ORF: BLASTX 221.0), t_PA3380 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGCCTTGCATTCCGATCCCACCATCGCCGCACGACAGCGCTGGATGGGCGTGCTCGCCCGCGCCCGT 
CGCGAGGAGCTGGACGCCCATGCGGACGCCCTGCGCGATGCCGACTATCACCTGCTGCGCGCCGCCGAGACC 
GGCATGACCCTGGTGCGCGGACGCATGGGCGGCACCGGCAGCCCGTTCAACTTCGGCGAGATGACCGTGACC 
CGCTGCGTGGTCCGCCTCGCTGACGGACGTACCGGCTACAGCTATGTCGCCGGGCGCGACAAGCGCCACGCC 
GAACTGGCCGCCCTGGCCGACGCGCACCTGCAGGGCGCCGATGCGGCGGCCTGGCAGGCGCGCCTGATCGAA 
CCGCTGGCCCGCACCCAGGCCGAGCGCCGCGCCGCCCAGGAGGCGGAAATCGCCACTACCAAGGTGGAGTTC 
TTCACCCTGGTCCGAGGAGAAGATTGA