ViewGene
Locus Name:
GeneID:
Location:

GeneID:4532
TrivialName: PA14_03080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03080
PAO1 Ortholog Locus:PA0249
Sequence Length:447
Protein Length:148
Start: 272047
Stop: 271601
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03638.1|AE004463_3 (AE004463) probable acetyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 148/148 (100%), Positives = 148/148 (100%)
Sequence:
ATGTCCTCTCCGCCGAAGATCCGCCGCTACATTCCCGCCGACCGCGATGCCACCCTCGCCATCTGGCTGGAG
GCCTCGCGCGTCGGCCACGGTTTCCTCGGCGAAGCCGAGTTGCAGAAGCAGAAGGCACTGGTTCGCGATCAT
TATCTGGATGCCTCGGAAACCTGGCTGGCGCTGGACGGCGATACGCCGCTGGGCTTCATCGGCCTGCTCGAT
GCCTTCATCGGCGGCCTGTTCGTCGCCCCGACGGCCCACGGGCGCGGGATCGGCCGGCAACTGGTGGAGCAC
GCGGCAACCCTGAAGGGCGCGCTGGAGGTCGAGGTCTACGCCGCCAACCGCGAGGCGCTGGGGTTCTACGCA
CGCTGCGGCTTCGTCGAGAGCGGCCGACGCCCGCGTGACGACGAGGGGCGCGCGCTGGAGATCGTCCAGTTG
CGCCGCGAACACTAG
Translation:
MSSPPKIRRYIPADRDATLAIWLEASRVGHGFLGEAELQKQKALVRDHYLDASETWLALDGDTPLGFIGLLD
AFIGGLFVAPTAHGRGIGRQLVEHAATLKGALEVEVYAANREALGFYARCGFVESGRRPRDDEGRALEIVQL
RREH*
AnnotationID:4538GeneID:4532
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 19:07:20
Gene Name:
Confidence Code:3
GeneProduct:putative acetyltransferase
Cell Localization:()
Synonyms:PA0249
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00583
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family.
CD-Length = 82 residues,  98.8% aligned
Score = 53.3 bits (128), Expect = 1e-08
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 12/81 (14%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9065




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26207




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33607




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4532_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4532
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6888
                           PA0249_tr
                           translation of PA0249
                           148
                           99.99
                           99.99
                           0
                           766.0
     

     
     
184033
                           gb|AAG03638.1|AE004463_3
                           (AE004463) probable acetyltransferase [Pseudomonas aeruginosa PAO1]
                           148
                           99.99
                           99.99
                           0
                           766.0
     

     
     
184034
                           emb|CAA54300.1|
                           (X76994) unnamed protein product [Pseudomonas aeruginosa]
                           150
                           96.00
                           96.00
                           5
                           719.0
     

     
     
6889
                           PA1428_tr
                           translation of PA1428
                           149
                           37.58
                           51.67
                           7
                           248.0
     

     
     
184036
                           gb|AAG04817.1|AE004572_5
                           (AE004572) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           149
                           37.58
                           51.67
                           7
                           248.0
     

     






      

          
GC ORFID: 47534How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0249Glimmer Score: 

          
Start: 6073388Stop: 6072942

          
Length: 447


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0249 translation of PA0249Homolog Bit Score 299.0

          
Other Homologs:  t_PA1428 (ORF: BLASTX 101.0), t_PA0249 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCTCTCCGCCGAAGATCCGCCGCTACATTCCCGCCGACCGCGATGCCACCCTCGCCATCTGGCTGGAG 
GCCTCGCGCGTCGGCCACGGTTTCCTCGGCGAAGCCGAGTTGCAGAAGCAGAAGGCACTGGTTCGCGATCAT 
TATCTGGATGCCTCGGAAACCTGGCTGGCGCTGGACGGCGATACGCCGCTGGGCTTCATCGGCCTGCTCGAT 
GCCTTCATCGGCGGCCTGTTCGTCGCCCCGACGGCCCACGGGCGCGGGATCGGCCGGCAACTGGTGGAGCAC 
GCGGCAACCCTGAAGGGCGCGCTGGAGGTCGAGGTCTACGCCGCCAACCGCGAGGCGCTGGGGTTCTACGCA 
CGCTGCGGCTTCGTCGAGAGCGGCCGACGCCCGCGTGACGACGAGGGGCGCGCGCTGGAGATCGTCCAGTTG 
CGCCGCGAACACTAG