ViewGene
Locus Name:
GeneID:
Location:

GeneID:4531
TrivialName: PA14_00730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00730
PAO1 Ortholog Locus:PA0061
Sequence Length:438
Protein Length:145
Start: 72360
Stop: 71923
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03451.1|AE004445_12 (AE004445) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 145/145 (100%), Positives = 145/145 (100%)
Sequence:
ATGCGTCCACTCACCCGTCTCGTCCCGCTCGCGCTGCTGCTCCTCGCCGGCTGCGCCGGACCGCTGCCGCAG
CCGGACCCGCAGATGGCCTGGGTCGAGCTGCGCAGCGCGCCGGCCAACACCCTGCTGGCCGAGCGCCTGGAC
GGCGAGCGGTTGAGCGACGGGCGCTACTTCCAGGTCACTCCGGGACGCCATGTGCTGGAGGTGCGCTTCCAG
TACGAACTCTATGGCGGTTCCGGCGGCGGGGGCGGCGGCTTCGGCGAGCCGGTGCAGATCAACTGCTACCAG
CAGGTGGTCTATGACGGCTTCGAGGCGGGCCGGCGCTATCGCCTGGAGGTGCGCCCGCAATTGCGCAGGGCG
CTGGCGCTACTGAGCGACGAGCGTGGCGAGGTGGTCGCCCGTTCGAACTTCCAGACCAGCCGCTGCCCGCCG
TACTGA
Translation:
MRPLTRLVPLALLLLAGCAGPLPQPDPQMAWVELRSAPANTLLAERLDGERLSDGRYFQVTPGRHVLEVRFQ
YELYGGSGGGGGGFGEPVQINCYQQVVYDGFEAGRRYRLEVRPQLRRALALLSDERGEVVARSNFQTSRCPP
Y*
AnnotationID:4537GeneID:4531
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 16:04:24
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0061
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9063




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26205




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4531
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6887
                           PA0061_tr
                           translation of PA0061
                           145
                           99.99
                           99.99
                           0
                           765.0
     

     
     
184030
                           gb|AAG03451.1|AE004445_12
                           (AE004445) hypothetical protein PA0061 [Pseudomonas aeruginosa PAO1]
                           145
                           99.99
                           99.99
                           0
                           765.0
     

     
     
184032
                           gb|AAN65725.1|AE016198_12
                           (AE016774) lipoprotein, putative [Pseudomonas putida KT2440]
                           146
                           44.52
                           55.47
                           10
                           298.0
     

     
     
184031
                           gb|AAO53704.1|
                           (AE016856) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           149
                           43.62
                           54.36
                           9
                           292.0
     

     






      

          
GC ORFID: 47533How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0061Glimmer Score: 

          
Start: 5873697Stop: 5873260

          
Length: 438


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0061 translation of PA0061Homolog Bit Score 299.0

          
Other Homologs:  t_PA0061 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTCCACTCACCCGTCTCGTCCCGCTCGCGCTGCTGCTCCTCGCCGGCTGCGCCGGACCGCTGCCGCAG 
CCGGACCCGCAGATGGCCTGGGTCGAGCTGCGCAGCGCGCCGGCCAACACCCTGCTGGCCGAGCGCCTGGAC 
GGCGAGCGGTTGAGCGACGGGCGCTACTTCCAGGTCACTCCGGGACGCCATGTGCTGGAGGTGCGCTTCCAG 
TACGAACTCTATGGCGGTTCCGGCGGCGGGGGCGGCGGCTTCGGCGAGCCGGTGCAGATCAACTGCTACCAG 
CAGGTGGTCTATGACGGCTTCGAGGCGGGCCGGCGCTATCGCCTGGAGGTGCGCCCGCAATTGCGCAGGGCG 
CTGGCGCTACTGAGCGACGAGCGTGGCGAGGTGGTCGCCCGTTCGAACTTCCAGACCAGCCGCTGCCCGCCG 
TACTGA