ViewGene
Locus Name:
GeneID:
Location:

GeneID:4530
TrivialName: PA14_00710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00710
PAO1 Ortholog Locus:PA0059
Sequence Length:456
Protein Length:151
Start: 71112
Stop: 71567
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03449.1|AE004445_10 (AE004445) osmotically inducible protein OsmC [Pseudomonas aeruginosa PAO1]
Identities = 151/151 (100%), Positives = 151/151 (100%)
Sequence:
ATGTCCATCCACAGCTCCGGAGGAGTCGACATGAAGAAGACGGCATCGGCGGTCTGGCAAGGCGGCCTGAAA
GACGGCAAGGGCACCCTTTCCACCGAAAGCGGCGCGCTCAAGGACAACCCCTATGGCTTCAATACCCGCTTC
GAGGGCGCACCGGGAACCAACCCGGAAGAGCTGATCGGCGCGGCCCACGCCGGCTGCTTCAGCATGGCCCTG
TCGATGATGCTCGGCGAGGCCGGCCTGACCGCCGAACGTATCGAGACCCGCGCCGAGGTCACCCTCGACAAG
CAGTCCGACGGTTTCGCCATCACTGCCGTGCACCTGGTGCTCAGGGCGCGCGTGCCGGGGGCGGACGCGCAG
ACCTTCGAGCAGATCGCCAACAAGGCCAAGGCCGGTTGCCCGGTATCCAAGGTGCTCAACGCGAAGATCAGC
CTGGACGCCAGCCTCGACGGCTGA
Translation:
MSIHSSGGVDMKKTASAVWQGGLKDGKGTLSTESGALKDNPYGFNTRFEGAPGTNPEELIGAAHAGCFSMAL
SMMLGEAGLTAERIETRAEVTLDKQSDGFAITAVHLVLRARVPGADAQTFEQIANKAKAGCPVSKVLNAKIS
LDASLDG*
AnnotationID:4536GeneID:4530
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 16:04:26
Gene Name:osmC
Confidence Code:2
GeneProduct:osmotically inducible protein OsmC
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:putative disulfide bond regulator
Functional Category Confidence Code:5
COGs:COG1764,pfam02566
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65723.1|AE016198_10 (AE016774) osmotically inducible protein OsmC [Pseudomonas putida
           KT2440]
          Length = 141

 Score =  248 bits (632), Expect = 1e-65
 Identities = 124/141 (87%), Positives = 130/141 (92%)

>emb|CAE32653.1| (BX640443) osmotically inducible protein C [Bordetella
           bronchiseptica]
          Length = 141

 Score =  207 bits (528), Expect = 1e-53
 Identities = 103/141 (73%), Positives = 117/141 (82%)








 
Structural Features:
COG1764, OsmC, Predicted redox protein, regulator of disulfide bond formation 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 143 residues,  98.6% aligned
Score =  108 bits (270), Expect = 4e-25
Identities = 50/142 (35%), Positives = 67/142 (47%), Gaps = 6/142 (4%)

pfam02566, OsmC, OsmC-like protein.
CD-Length = 133 residues,  97.7% aligned
Score = 86.6 bits (214), Expect = 1e-18
Identities = 48/136 (35%), Positives = 66/136 (48%), Gaps = 7/136 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9061




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26203




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33414




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4530_cdd.html


    		




 
URL:

















    ReferenceID:35513




  
Author/Investigator(s):
        Gutierrez C, Devedjian JC.





  
Title:
        Osmotic induction of gene osmC expression in Escherichia coli K12.




  
PubMed:
        1715407


MedLine:
        




    
Source:
J Mol Biol. 1991 Aug 20;220(4):959-73.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1715407









           
Homologs By Global Alignment 

           

       



     
Gene ID:4530
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6886
                           PA0059_tr
                           translation of PA0059
                           151
                           99.99
                           99.99
                           0
                           766.0
     

     
     
184003
                           gb|AAG03449.1|AE004445_10
                           (AE004445) osmotically inducible protein OsmC [Pseudomonas aeruginosa PAO1]
                           151
                           99.99
                           99.99
                           0
                           766.0
     

     
     
184004
                           gb|AAN65723.1|AE016198_10
                           (AE016774) osmotically inducible protein OsmC [Pseudomonas putida KT2440]
                           151
                           82.11
                           86.09
                           10
                           632.0
     

     
     
184005
                           emb|CAE32653.1|
                           (BX640443) osmotically inducible protein C [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           151
                           68.21
                           77.48
                           10
                           528.0
     

     
     
184006
                           emb|CAE37269.1|
                           (BX640429) osmotically inducible protein C [Bordetella parapertussis]
                           151
                           68.21
                           77.48
                           10
                           528.0
     

     






      

          
GC ORFID: 47532How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0059Glimmer Score: 

          
Start: 5872449Stop: 5872904

          
Length: 456


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0059 translation of PA0059Homolog Bit Score 299.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene2992 (ORF: BLASTX 192.0), t_PA0059 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCATCCACAGCTCCGGAGGAGTCGACATGAAGAAGACGGCATCGGCGGTCTGGCAAGGCGGCCTGAAA 
GACGGCAAGGGCACCCTTTCCACCGAAAGCGGCGCGCTCAAGGACAACCCCTATGGCTTCAATACCCGCTTC 
GAGGGCGCACCGGGAACCAACCCGGAAGAGCTGATCGGCGCGGCCCACGCCGGCTGCTTCAGCATGGCCCTG 
TCGATGATGCTCGGCGAGGCCGGCCTGACCGCCGAACGTATCGAGACCCGCGCCGAGGTCACCCTCGACAAG 
CAGTCCGACGGTTTCGCCATCACTGCCGTGCACCTGGTGCTCAGGGCGCGCGTGCCGGGGGCGGACGCGCAG 
ACCTTCGAGCAGATCGCCAACAAGGCCAAGGCCGGTTGCCCGGTATCCAAGGTGCTCAACGCGAAGATCAGC 
CTGGACGCCAGCCTCGACGGCTGA