ViewGene

Locus Name:
GeneID:
Location:

GeneID:453
TrivialName: PA14_06840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06840
PAO1 Ortholog Locus:PA0525
Sequence Length:1839
Protein Length:612
Start: 593831
Stop: 595669
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03914.1|AE004489_6 (AE004489) probable dinitrification protein NorD [Pseudomonas aeruginosa PAO1]
Identities = 609/612 (99%), Positives = 610/612 (99%)
Sequence:
ATGGCCTTCGCCGTCGAGCTGGAGGAATGGGTCGGCGCCCACTGGCACCGCTTCATCACCCGCCATGCCAGC
GGCGAGTTCGAGGCGGCGCGGGTGACCCTGGAGAGCATGCGGCGTCCGCTCGGCATGCTCTTCCGGGCGCTC
GGCGGCGCACCGGGGGTAGCCCTCGAGGCGACCCCGGCGCGCCGCCTGCTGCTACGCCGCACCTGGTTGCAG
CGGGTCGCCGGGACCTGCGAGCAGGCCCCGGTGTCCTGGTTCAACGGCGACAGCCTGCGCCTGCCGGAATCC
CTCGCGGTCTATCCGCAGGCCGAGCTGAACCGTGAACTGTATCGCTGGCTGGCGCTACTGGCGGCCAGCGCC
GGGCCGCTGCGGCACTGGGCCCAGGACAACCAGCGCTGGGCGCGGCAGTTGCTCGATGCCTATCCGGCGCTG
CGCCCGCGCTACGCCCGGCTGGTCGCCGCGCATCTGCGCCAGCGCCCGTCGCTGGACGATTGCCCGGCGGCA
GACGCCGAACTGGAAATCGCCCTGCGCCGCGCGCTTGCCGAGCCGGGCAGCGTCGAGCGCTTCCCGCGAGTC
GAGCGGGCGCCCTGGCCGGTGCCGCTGTGGCTGTATCCCGGCGAGCGCTGGACGCCTTCCGCCAGCGCGGAG
GACGGCGAGGAAGCGGCCGCCGGCGCCGGCAAGCGCCAGGTCGCCCGCAGCGGAGCGCGCAAGCGCGCCGAG
CGCGTCGAGGAGCGCGAGAGCGAGCGCAACCTGCTGCTGTTCCGCCTGGAAAGCCTGCTCAGTTGGTCGGAG
CACCTGGCCCTGGACCGCTGTAGCGACGACGAGGACGACCCGGACGGCGCGCGCGTCGCCGAAGACCTCGAC
TACCTGTCGCTGTCGCGCCAGCGCACGCAGAAGGGCGGCGGCCTGCGCCTGGATCTCGACCTGCCGGCCGCC
GACTACGATGACCTGCCGCTCGGCCCCGGGCTGAAGCTGCCCGAGTGGGACTATCGGCAGCAGCGCCTGCTG
AGCGACCACGTGCTGCTGCAACCGATGCGGCCGCGCGGCGCGACCAGCGCCAGCCTGCCGGCGCACCTGGAG
AAGACCGCGCTGCATCTGCGCCGCCAGTTCGCCTGCCTGCGCGACGGTCGCCAACGCCTGCGCCAGCAGCCG
CAAGGCGACGAGATCGACCTCGATGCCTGGCTCGACTTCCAGGTCGAGCGGCGGCGCGGCGGTTCCACCCAG
CCAGGCCTGTTCCTCGAACAGCGGCCGCGCCGGCGCGACCTCGCCTGCCTGTTGCTGGCGGACCTGTCGATG
TCCACCGAAGCCTACCTCGACGACCAGCGGCGAGTGATCGACAGCATCGTCGACAGCCTGCTGCTGTTCGGC
GAGGCATTGCAGGCACTGGGCGACCCCTTCGCGCTGTACGGGTTTTCCTCGGTGCGCCGGCAGCAGGTGCGC
TGGCAGGTGCTGAAGGACTTCGACGAAGGCTACGGCGGCGAGGTCCGCGGTCGCGTGCTGGCGCTCTCGCCG
GGCTACTACACGCGGATGGGCGCGGCGATCCGCCGGGCCAGCCAGGAGCTCGGCGGGCAGCCGCAGAAGCGT
CGCCTGCTGTTGCTGTTGAGCGACGGCAAGCCCAACGACCTGGACCGCTACGAGGGCCGCTACGGCATCGAG
GACACCCGCCAGGCGGTGATCGAGGCGCGCAGCCAGGGACTGGTGCCGTTCTGCATCACCATCGACAAGGAG
GCGGCGGACTACCTGCCCTACCTGTTCGGCGCCGACGGCTTCGCGCTGGTCGAGCGCGCCGGGCAGTTGCCC
GAGCGCCTGCTCCAGCTCTATCGGCGCCTGCGCCGCTGA
Translation:
MAFAVELEEWVGAHWHRFITRHASGEFEAARVTLESMRRPLGMLFRALGGAPGVALEATPARRLLLRRTWLQ
RVAGTCEQAPVSWFNGDSLRLPESLAVYPQAELNRELYRWLALLAASAGPLRHWAQDNQRWARQLLDAYPAL
RPRYARLVAAHLRQRPSLDDCPAADAELEIALRRALAEPGSVERFPRVERAPWPVPLWLYPGERWTPSASAE
DGEEAAAGAGKRQVARSGARKRAERVEERESERNLLLFRLESLLSWSEHLALDRCSDDEDDPDGARVAEDLD
YLSLSRQRTQKGGGLRLDLDLPAADYDDLPLGPGLKLPEWDYRQQRLLSDHVLLQPMRPRGATSASLPAHLE
KTALHLRRQFACLRDGRQRLRQQPQGDEIDLDAWLDFQVERRRGGSTQPGLFLEQRPRRRDLACLLLADLSM
STEAYLDDQRRVIDSIVDSLLLFGEALQALGDPFALYGFSSVRRQQVRWQVLKDFDEGYGGEVRGRVLALSP
GYYTRMGAAIRRASQELGGQPQKRRLLLLLSDGKPNDLDRYEGRYGIEDTRQAVIEARSQGLVPFCITIDKE
AADYLPYLFGADGFALVERAGQLPERLLQLYRRLRR*
AnnotationID:462GeneID:453
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 12:12:50
Gene Name:
Confidence Code:3
GeneProduct:putative dinitrification protein NorD
Cell Localization:()
Synonyms:norD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4548
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG4548, NorD, Nitric oxide reductase activation protein 
[Inorganic ion transport and metabolism]
CD-Length = 637 residues, 100.0% aligned
Score =  700 bits (1809), Expect = 0.0
Identities = 296/639 (46%), Positives = 366/639 (57%), Gaps = 29/639 (4%)
Genomic Context:
Comment:
ReferenceID:909
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18051
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33809
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:453_cdd.html
URL:
Homologs By Global Alignment
Gene ID:453

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
775 PA0525_tr translation of PA0525 612 99.50 99.67 0 3168.0
33856 gb|AAG03914.1|AE004489_6 (AE004489) probable dinitrification protein NorD [Pseudomonas aeruginosa PAO1] 612 99.50 99.67 0 3168.0
33857 dbj|BAA07331.1| (D38133) hypothetical protein [Pseudomonas aeruginosa] 612 99.50 99.67 0 3168.0
33858 emb|CAA82230.1| (Z28384) hypothetical protein [Pseudomonas stutzeri] 612 12.09 15.03 497 396.0
GC ORFID: 43455How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0525Glimmer Score:
Start: 6395173Stop: 6397011
Length: 1839
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0525 translation of PA0525Homolog Bit Score 1224.0
Other Homologs: t_PA0525 (ORF: GLIMMER)
GC ORF Sequence
ATGGCCTTCGCCGTCGAGCTGGAGGAATGGGTCGGCGCCCACTGGCACCGCTTCATCACCCGCCATGCCAGC
GGCGAGTTCGAGGCGGCGCGGGTGACCCTGGAGAGCATGCGGCGTCCGCTCGGCATGCTCTTCCGGGCGCTC
GGCGGCGCACCGGGGGTAGCCCTCGAGGCGACCCCGGCGCGCCGCCTGCTGCTACGCCGCACCTGGTTGCAG
CGGGTCGCCGGGACCTGCGAGCAGGCCCCGGTGTCCTGGTTCAACGGCGACAGCCTGCGCCTGCCGGAATCC
CTCGCGGTCTATCCGCAGGCCGAGCTGAACCGTGAACTGTATCGCTGGCTGGCGCTACTGGCGGCCAGCGCC
GGGCCGCTGCGGCACTGGGCCCAGGACAACCAGCGCTGGGCGCGGCAGTTGCTCGATGCCTATCCGGCGCTG
CGCCCGCGCTACGCCCGGCTGGTCGCCGCGCATCTGCGCCAGCGCCCGTCGCTGGACGATTGCCCGGCGGCA
GACGCCGAACTGGAAATCGCCCTGCGCCGCGCGCTTGCCGAGCCGGGCAGCGTCGAGCGCTTCCCGCGAGTC
GAGCGGGCGCCCTGGCCGGTGCCGCTGTGGCTGTATCCCGGCGAGCGCTGGACGCCTTCCGCCAGCGCGGAG
GACGGCGAGGAAGCGGCCGCCGGCGCCGGCAAGCGCCAGGTCGCCCGCAGCGGAGCGCGCAAGCGCGCCGAG
CGCGTCGAGGAGCGCGAGAGCGAGCGCAACCTGCTGCTGTTCCGCCTGGAAAGCCTGCTCAGTTGGTCGGAG
CACCTGGCCCTGGACCGCTGTAGCGACGACGAGGACGACCCGGACGGCGCGCGCGTCGCCGAAGACCTCGAC
TACCTGTCGCTGTCGCGCCAGCGCACGCAGAAGGGCGGCGGCCTGCGCCTGGATCTCGACCTGCCGGCCGCC
GACTACGATGACCTGCCGCTCGGCCCCGGGCTGAAGCTGCCCGAGTGGGACTATCGGCAGCAGCGCCTGCTG
AGCGACCACGTGCTGCTGCAACCGATGCGGCCGCGCGGCGCGACCAGCGCCAGCCTGCCGGCGCACCTGGAG
AAGACCGCGCTGCATCTGCGCCGCCAGTTCGCCTGCCTGCGCGACGGTCGCCAACGCCTGCGCCAGCAGCCG
CAAGGCGACGAGATCGACCTCGATGCCTGGCTCGACTTCCAGGTCGAGCGGCGGCGCGGCGGTTCCACCCAG
CCAGGCCTGTTCCTCGAACAGCGGCCGCGCCGGCGCGACCTCGCCTGCCTGTTGCTGGCGGACCTGTCGATG
TCCACCGAAGCCTACCTCGACGACCAGCGGCGAGTGATCGACAGCATCGTCGACAGCCTGCTGCTGTTCGGC
GAGGCATTGCAGGCACTGGGCGACCCCTTCGCGCTGTACGGGTTTTCCTCGGTGCGCCGGCAGCAGGTGCGC
TGGCAGGTGCTGAAGGACTTCGACGAAGGCTACGGCGGCGAGGTCCGCGGTCGCGTGCTGGCGCTCTCGCCG
GGCTACTACACGCGGATGGGCGCGGCGATCCGCCGGGCCAGCCAGGAGCTCGGCGGGCAGCCGCAGAAGCGT
CGCCTGCTGTTGCTGTTGAGCGACGGCAAGCCCAACGACCTGGACCGCTACGAGGGCCGCTACGGCATCGAG
GACACCCGCCAGGCGGTGATCGAGGCGCGCAGCCAGGGACTGGTGCCGTTCTGCATCACCATCGACAAGGAG
GCGGCGGACTACCTGCCCTACCTGTTCGGCGCCGACGGCTTCGCGCTGGTCGAGCGCGCCGGGCAGTTGCCC
GAGCGCCTGCTCCAGCTCTATCGGCGCCTGCGCCGCTGA