ViewGene
Locus Name:
GeneID:
Location:

GeneID:4529
TrivialName: PA14_20720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20720
PAO1 Ortholog Locus:PA3352
Sequence Length:471
Protein Length:156
Start: 1784053
Stop: 1783583
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06740.1|AE004757_9 (AE004757) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 155/156 (99%), Positives = 156/156 (100%)
Sequence:
ATGCCTGACTCCCCTACCCTGCTCGATCTGTTCGCCGAGGATATCGGCCACGCCAGCCAACTCCTGCAGTTG
GTCGACGAAGAATTCCAGGCCCTGGAACGGCGCGAGCTGCCGGTCCTGCAACAGCTTCTCGGGGCCAAGCAG
CCACTGATGCAGCAACTGGAGCGAAATGGCCGGGCCCGCGCGGAAATCCTCCGCGAAGCCGGCGTTTCCCTC
GACCGCGAAGGCCTTGCCCGCTACGCCCGCGAGCGCGCGGATGGCGCCGAGCTGCTGGCGCGCGGCGACGAA
CTGGGCGAACTGCTGGAGCGTTGCCAGCAGGCCAACCTGCGCAACGGGCGGATCATCCGCGCCAACCAGGCT
TCCACCGGCAGCCTGCTGAACATCCTCCGCGGCCAGGACGCCCCTAGCCTGTACGACAGCCGCGGCGGCACC
GCCTCGAGCAGCCGGCAACGCCCGCTCAGCCAGGCCTGA
Translation:
MPDSPTLLDLFAEDIGHASQLLQLVDEEFQALERRELPVLQQLLGAKQPLMQQLERNGRARAEILREAGVSL
DREGLARYARERADGAELLARGDELGELLERCQQANLRNGRIIRANQASTGSLLNILRGQDAPSLYDSRGGT
ASSSRQRPLSQA*
AnnotationID:4535GeneID:4529
AnnotatorUID: diggins
Modification Date/Time: 2005-08-21 17:05:42
Gene Name:flgN
Confidence Code:3
GeneProduct:putative export chaperone involved in flagellar synthesis
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:FlgN protein
Functional Category Confidence Code:5
COGs:pfam05130,COG3418
Secondary Functional Category(ies):motility and attachment
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam05130, FlgN, FlgN protein. This family includes the FlgN protein 
and export chaperone involved in flagellar synthesis.
CD-Length = 145 residues,  99.3% aligned
Score =  144 bits (365), Expect = 3e-36
Identities = 47/154 (30%), Positives = 75/154 (48%), Gaps = 12/154 (7%)

COG3418, Flagellar biosynthesis/type III secretory pathway chaperone 
[Cell motility and secretion / Intracellular trafficking and secretion]
CD-Length = 146 residues, 100.0% aligned
Score =  133 bits (336), Expect = 1e-32
Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 12/156 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9059




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26201




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32202




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4529_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4529
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6885
                           PA3352_tr
                           translation of PA3352
                           156
                           99.35
                           99.99
                           0
                           765.0
     

     
     
183999
                           gb|AAG06740.1|AE004757_9
                           (AE004757) hypothetical protein PA3352 [Pseudomonas aeruginosa PAO1]
                           156
                           99.35
                           99.99
                           0
                           765.0
     

     
     
184000
                           gb|AAK31637.1|
                           (AY029221) FlgN [Pseudomonas aeruginosa]
                           156
                           99.35
                           99.99
                           0
                           765.0
     

     
     
184001
                           gb|AAN69974.1|AE016635_10
                           (AE016790) conserved hypothetical protein [Pseudomonas putida KT2440]
                           156
                           42.94
                           63.46
                           1
                           306.0
     

     
     
184002
                           gb|AAO55442.1|
                           (AE016862) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           156
                           40.38
                           60.89
                           1
                           290.0
     

     






      

          
GC ORFID: 47531How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3352Glimmer Score: 

          
Start: 3169879Stop: 3170349

          
Length: 471


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3352 translation of PA3352Homolog Bit Score 299.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7561 (ORF: BLASTX 119.0), t_PA3352 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTGACTCCCCTACCCTGCTCGATCTGTTCGCCGAGGATATCGGCCACGCCAGCCAACTCCTGCAGTTG 
GTCGACGAAGAATTCCAGGCCCTGGAACGGCGCGAGCTGCCGGTCCTGCAACAGCTTCTCGGGGCCAAGCAG 
CCACTGATGCAGCAACTGGAGCGAAATGGCCGGGCCCGCGCGGAAATCCTCCGCGAAGCCGGCGTTTCCCTC 
GACCGCGAAGGCCTTGCCCGCTACGCCCGCGAGCGCGCGGATGGCGCCGAGCTGCTGGCGCGCGGCGACGAA 
CTGGGCGAACTGCTGGAGCGTTGCCAGCAGGCCAACCTGCGCAACGGGCGGATCATCCGCGCCAACCAGGCT 
TCCACCGGCAGCCTGCTGAACATCCTCCGCGGCCAGGACGCCCCTAGCCTGTACGACAGCCGCGGCGGCACC 
GCCTCGAGCAGCCGGCAACGCCCGCTCAGCCAGGCCTGA