ViewGene

Locus Name:
GeneID:
Location:

GeneID:4528
TrivialName: PA14_36520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36520
PAO1 Ortholog Locus:PA2171
Sequence Length:471
Protein Length:156
Start: 3249795
Stop: 3249325
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05559.1|AE004644_6 (AE004644) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 154/156 (98%), Positives = 155/156 (99%)
Sequence:
ATGAACGCCATCGAATTGCTGGTCCATGACCACGAGACCGTGAAGAAACTGCTCAACGAACTCAGCGAGACC
ACCGAACGGGCGCTGAAGAAGCGCAGCGAGCTGCTGGGCAGGCTGGAGCTGGAACTGGTGCTGCACACCGCC
ATCGAGGAAGACATCCTCTATCCGGCGATCAGGGACAGCGGCGGCAAGGAAGAGCTGAAGATGTACTACGAG
GCCAAGGAGGAACACCGCACGGTGGACTCCCTGGTCCTTCCCGACCTCAAGCGCACCCGCCCGGACACCGTG
CAGTTCGCCGGCCGGGTCAAGGTGCTCAAGGAACTCCTGGAGCACCACATCGAGGAGGAGGAGGGCGAGCTG
TTCCCGCGCGCCCGGCAATTGCTCGACGCCGCCGCCCTCAAGCAACTCGGCCAGGCCATGCAGCAGCACAAG
AAAGAGCTGAAGGCGCGCCTGGAAAAACGGGCGGCCTGA
Translation:
MNAIELLVHDHETVKKLLNELSETTERALKKRSELLGRLELELVLHTAIEEDILYPAIRDSGGKEELKMYYE
AKEEHRTVDSLVLPDLKRTRPDTVQFAGRVKVLKELLEHHIEEEEGELFPRARQLLDAAALKQLGQAMQQHK
KELKARLEKRAA*
AnnotationID:4534GeneID:4528
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 12:12:10
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2171
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:9057
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26199
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32560
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4528_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4528

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6884 PA2171_tr translation of PA2171 156 98.71 99.35 0 766.0
183997 gb|AAG05559.1|AE004644_6 (AE004644) hypothetical protein PA2171 [Pseudomonas aeruginosa PAO1] 156 98.71 99.35 0 766.0
183998 gb|AAN68330.1|AE016466_15 (AE016784) conserved hypothetical protein [Pseudomonas putida KT2440] 156 71.15 82.69 2 543.0
GC ORFID: 47530How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2171Glimmer Score:
Start: 1704120Stop: 1704590
Length: 471
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2171 translation of PA2171Homolog Bit Score 299.0
Other Homologs: t_PA2171 (ORF: GLIMMER)
GC ORF Sequence
ATGAACGCCATCGAATTGCTGGTCCATGACCACGAGACCGTGAAGAAACTGCTCAACGAACTCAGCGAGACC
ACCGAACGGGCGCTGAAGAAGCGCAGCGAGCTGCTGGGCAGGCTGGAGCTGGAACTGGTGCTGCACACCGCC
ATCGAGGAAGACATCCTCTATCCGGCGATCAGGGACAGCGGCGGCAAGGAAGAGCTGAAGATGTACTACGAG
GCCAAGGAGGAACACCGCACGGTGGACTCCCTGGTCCTTCCCGACCTCAAGCGCACCCGCCCGGACACCGTG
CAGTTCGCCGGCCGGGTCAAGGTGCTCAAGGAACTCCTGGAGCACCACATCGAGGAGGAGGAGGGCGAGCTG
TTCCCGCGCGCCCGGCAATTGCTCGACGCCGCCGCCCTCAAGCAACTCGGCCAGGCCATGCAGCAGCACAAG
AAAGAGCTGAAGGCGCGCCTGGAAAAACGGGCGGCCTGA