ViewGene
Locus Name:
GeneID:
Location:

GeneID:4527
TrivialName: PA14_42490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42490
PAO1 Ortholog Locus:PA1704
Sequence Length:435
Protein Length:144
Start: 3783283
Stop: 3782849
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05093.1|AE004597_7 (AE004597) transcriptional regulator protein PcrR [Pseudomonas aeruginosa PAO1]
Identities = 144/144 (100%), Positives = 144/144 (100%)
Sequence:
GTGAGCGCCGATCCGCTGATTCCCTGGTTTCTCGCCCGCGGCCTGGCGGTGCGTCCGCATTGCCTGCGCGAC
ACCTCGATCGCGCTCGGTTGGCAGGTCCTGGCCCATGGCTGCGAACTGGCCTGGCGCTGCGACGGCGAGCGG
GTCTGGATCGTGATGTTGCGTCGGCGGCAGGCGCGCAGCGGATTGGCCAATCCATTCGCCGCGCTGTACCTG
CTGGCGGAGGCCACGCTCGATACGCTGGGGCCGCGCCAGCGTCTCTACGGCAAGGTCCTGGCGCTGGCCGGC
AGCCCGCTGCCTGGCGAGCGCATGGCGCGCTTCTATCGCCGCTGGACCGGCGCCGCCGAGCCCGCCGACGGC
TGGTTCGAGCTGGAGGCCGGGCGGGTGGTGACGCAGCGAAGCCTGCGAAAACGACAAAAACCCGACCGTGCC
TGA
Translation:
MSADPLIPWFLARGLAVRPHCLRDTSIALGWQVLAHGCELAWRCDGERVWIVMLRRRQARSGLANPFAALYL
LAEATLDTLGPRQRLYGKVLALAGSPLPGERMARFYRRWTGAAEPADGWFELEAGRVVTQRSLRKRQKPDRA
*
AnnotationID:4533GeneID:4527
AnnotatorUID: diggins
Modification Date/Time: 2005-02-28 06:06:03
Gene Name:pcrR
Confidence Code:1
GeneProduct:transcriptional regulator protein PcrR
Cell Localization:()
Synonyms:lcrR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):protein secretion/export apparatus
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO18051.1| (AY144116) LssR [Photorhabdus luminescens]
          Length = 144

 Score =  172 bits (436), Expect = 5e-43
 Identities = 82/140 (58%), Positives = 99/140 (70%)

>gb|AAA27648.1| (M96850) lcrR [Yersinia pseudotuberculosis]
          Length = 146

 Score =  144 bits (363), Expect = 1e-34
 Identities = 74/141 (52%), Positives = 91/141 (64%), Gaps = 2/141 (1%)








 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15112




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26197




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37853




  
Author/Investigator(s):
        Barve SS, Straley SC.





  
Title:
        lcrR, a low-Ca2(+)-response locus with dual Ca2(+)-dependent functions in Yersinia pestis.




  
PubMed:
        1695896


MedLine:
        




    
Source:
J Bacteriol. 1990 Aug;172(8):4661-71.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1695896









           
Homologs By Global Alignment 

           

       



     
Gene ID:4527
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6883
                           PA1704_tr
                           translation of PA1704
                           144
                           99.99
                           99.99
                           0
                           765.0
     

     
     
183984
                           gb|AAG05093.1|AE004597_7
                           (AE004597) transcriptional regulator protein PcrR [Pseudomonas aeruginosa PAO1]
                           144
                           99.30
                           99.99
                           0
                           762.0
     

     
     
183985
                           gb|AAC45945.1|
                           (AF010150) PcrR [Pseudomonas aeruginosa]
                           144
                           99.30
                           99.99
                           0
                           762.0
     

     
     
183986
                           emb|CAE16132.1|
                           (BX571871) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           144
                           57.63
                           70.83
                           0
                           442.0
     

     
     
183987
                           gb|AAO18051.1|
                           (AY144116) LssR [Photorhabdus luminescens]
                           144
                           56.25
                           69.44
                           0
                           428.0
     

     






      

          
GC ORFID: 47529How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1704Glimmer Score: 

          
Start: 1170626Stop: 1171060

          
Length: 435


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1704 translation of PA1704Homolog Bit Score 299.0

          
Other Homologs:  t_PA1704 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGCGCCGATCCGCTGATTCCCTGGTTTCTCGCCCGCGGCCTGGCGGTGCGTCCGCATTGCCTGCGCGAC 
ACCTCGATCGCGCTCGGTTGGCAGGTCCTGGCCCATGGCTGCGAACTGGCCTGGCGCTGCGACGGCGAGCGG 
GTCTGGATCGTGATGTTGCGTCGGCGGCAGGCGCGCAGCGGATTGGCCAATCCATTCGCCGCGCTGTACCTG 
CTGGCGGAGGCCACGCTCGATACGCTGGGGCCGCGCCAGCGTCTCTACGGCAAGGTCCTGGCGCTGGCCGGC 
AGCCCGCTGCCTGGCGAGCGCATGGCGCGCTTCTATCGCCGCTGGACCGGCGCCGCCGAGCCCGCCGACGGC 
TGGTTCGAGCTGGAGGCCGGGCGGGTGGTGACGCAGCGAAGCCTGCGAAAACGACAAAAACCCGACCGTGCC 
TGA