ViewGene
Locus Name:
GeneID:
Location:

GeneID:4526
TrivialName: PA14_06690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06690
PAO1 Ortholog Locus:PA0513
Sequence Length:444
Protein Length:147
Start: 585500
Stop: 585057
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03902.1|AE004488_6 (AE004488) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 147/147 (100%), Positives = 147/147 (100%)
Sequence:
ATGGATGAGTTCGACCGGCGCCTGCTGAACCGCCTGCAACACGGCCTGCCGCTGGAGCCGCATCCCTACGCG
CTGCTCGCCGCCGAGCTGGATTGCCGCGAGGAAGACATCCTGCGCCGCCTCGACGACCTGCTCGACGACGGC
ACCCTGACCCGCTTCGGTCCGCTGTTCGATATCGAGCCCCTCGGCGGTGCCTTCACCCTGGCCGCCATGAGC
GTGCCGGAGGCGCGTTTCGAAGAGATCGCCGCGCTGCTCGCCGGCTGGCCGCAGGTCGCCCACAACTACCGT
CGCGAGCACGCCCTGAACATGTGGCTGGTGGTCGCCTGCGACAGCCCGGCGGAGGTCGCCGAGACCCTTGCA
CGGCTGGAGCGCGAGAGCGGGCTGGCGGTACTCGACCTGCCCAAGGAGGCGACCTACCATGTCGGCCTGCAT
TTCCCCCTCTGA
Translation:
MDEFDRRLLNRLQHGLPLEPHPYALLAAELDCREEDILRRLDDLLDDGTLTRFGPLFDIEPLGGAFTLAAMS
VPEARFEEIAALLAGWPQVAHNYRREHALNMWLVVACDSPAEVAETLARLERESGLAVLDLPKEATYHVGLH
FPL*
AnnotationID:4532GeneID:4526
AnnotatorUID: diggins
Modification Date/Time: 2005-05-08 15:03:39
Gene Name:nirG
Confidence Code:2
GeneProduct:heme d1 biosynthesis protein NirG
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:putative transcriptional regulator
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):energy metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAA90581.1| (Z50198) NirG protein [Pseudomonas stutzeri]
          Length = 147

 Score =  200 bits (509), Expect = 2e-51
 Identities = 94/147 (63%), Positives = 116/147 (78%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9053




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26195




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33821




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4256_cdd.html


    		




 
URL:

















    ReferenceID:35306




  
Author/Investigator(s):
        Kawasaki S, Arai H, Kodama T, Igarashi Y.





  
Title:
        Gene cluster for dissimilatory nitrite reductase (nir) from Pseudomonas aeruginosa: sequencing and identification of a locus for heme d1 biosynthesis.




  
PubMed:
        8982003


MedLine:
        




    
Source:
J Bacteriol. 1997 Jan;179(1):235-42.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8982003









           
Homologs By Global Alignment 

           

       



     
Gene ID:4526
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6881
                           PA0513_tr
                           translation of PA0513
                           147
                           99.99
                           99.99
                           0
                           769.0
     

     
     
183976
                           gb|AAG03902.1|AE004488_6
                           (AE004488) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           147
                           99.99
                           99.99
                           0
                           769.0
     

     
     
183977
                           dbj|BAA12679.1|
                           (D84475) NirG [Pseudomonas aeruginosa]
                           147
                           99.99
                           99.99
                           0
                           769.0
     

     
     
183978
                           emb|CAA90581.1|
                           (Z50198) NirG protein [Pseudomonas stutzeri]
                           147
                           63.94
                           78.91
                           0
                           509.0
     

     
     
183979
                           emb|CAA90579.1|
                           (Z50198) NirD protein [Pseudomonas stutzeri]
                           153
                           42.48
                           60.13
                           7
                           331.0
     

     






      

          
GC ORFID: 47528How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0513Glimmer Score: 

          
Start: 6386842Stop: 6386399

          
Length: 444


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0513 translation of PA0513Homolog Bit Score 300.0

          
Other Homologs:  t_PA0515 (ORF: BLASTX 120.0), t_PA0513 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATGAGTTCGACCGGCGCCTGCTGAACCGCCTGCAACACGGCCTGCCGCTGGAGCCGCATCCCTACGCG 
CTGCTCGCCGCCGAGCTGGATTGCCGCGAGGAAGACATCCTGCGCCGCCTCGACGACCTGCTCGACGACGGC 
ACCCTGACCCGCTTCGGTCCGCTGTTCGATATCGAGCCCCTCGGCGGTGCCTTCACCCTGGCCGCCATGAGC 
GTGCCGGAGGCGCGTTTCGAAGAGATCGCCGCGCTGCTCGCCGGCTGGCCGCAGGTCGCCCACAACTACCGT 
CGCGAGCACGCCCTGAACATGTGGCTGGTGGTCGCCTGCGACAGCCCGGCGGAGGTCGCCGAGACCCTTGCA 
CGGCTGGAGCGCGAGAGCGGGCTGGCGGTACTCGACCTGCCCAAGGAGGCGACCTACCATGTCGGCCTGCAT 
TTCCCCCTCTGA