ViewGene
Locus Name:
GeneID:
Location:

GeneID:4525
TrivialName: PA14_64100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64100
PAO1 Ortholog Locus:PA4847
Sequence Length:471
Protein Length:156
Start: 5712956
Stop: 5713426
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08232.1|AE004898_3 (AE004898) biotin carboxyl carrier protein (BCCP) [Pseudomonas aeruginosa PAO1]
Identities = 156/156 (100%), Positives = 156/156 (100%)
Sequence:
ATGGACATTCGTAAAGTCAAGAAACTGATCGAGCTGCTGGAAGAGTCCGGTATCGACGAGCTGGAAATCCGC
GAAGGCGAAGAGTCGGTACGCATCAGCCGCCACAGCAAGACCGCCGCCCAGCCGGTGTACGCACAGGCTCCG
GCCTTCGCCGCTCCGGTCGCCGCGCCGGCGCCGGCAGCCGCCGCTCCGGCCGCCGCTGCCGCGGAAAGCGCC
CCGGCCGCTCCGAAGCTGAACGGCAACGTGGTTCGCTCGCCGATGGTCGGCACCTTCTACCGCGCCGCCTCG
CCGACCTCGGCCAACTTCGTCGAAGTCGGCCAGAGCGTGAAGAAAGGCGACATCCTGTGCATCGTCGAAGCC
ATGAAGATGATGAACCACATCGAAGCCGAAGTTAGCGGCACCATCGAGTCGATCCTGGTGGAGAACGGCCAG
CCGGTTGAGTTCGACCAGCCGCTGTTCACCATCGTCTAA
Translation:
MDIRKVKKLIELLEESGIDELEIREGEESVRISRHSKTAAQPVYAQAPAFAAPVAAPAPAAAAPAAAAAESA
PAAPKLNGNVVRSPMVGTFYRAASPTSANFVEVGQSVKKGDILCIVEAMKMMNHIEAEVSGTIESILVENGQ
PVEFDQPLFTIV*
AnnotationID:4531GeneID:4525
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 06:06:31
Gene Name:accB
Confidence Code:1
GeneProduct:biotin carboxyl carrier protein
Cell Localization:()
Synonyms:fabE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:acetyl-CoA carboxylase
Functional Category Confidence Code:5
COGs:COG0511,pfam00364
Secondary Functional Category(ies):
EC Number:6.4.1.2
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58289.1| (AE016873) acetyl-CoA carboxylase, biotin carboxyl carrier protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 151

 Score =  243 bits (621), Expect = 2e-64
 Identities = 132/156 (84%), Positives = 138/156 (88%), Gaps = 5/156 (3%)

>gb|AAN66186.1|AE016246_3 (AE016776) acetyl-CoA carboxylase, biotin carboxyl carrier protein
           [Pseudomonas putida KT2440]
          Length = 153

 Score =  230 bits (587), Expect = 2e-60
 Identities = 126/157 (80%), Positives = 133/157 (84%), Gaps = 5/157 (3%)

>dbj|BAC61143.1| (AP005083) acetyl-CoA carboxylase, biotin carboxyl carrier protein
           [Vibrio parahaemolyticus]
          Length = 152

 Score =  191 bits (485), Expect = 1e-48
 Identities = 105/155 (67%), Positives = 117/155 (75%), Gaps = 4/155 (2%)








 
Structural Features:
COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism]
CD-Length = 140 residues,  98.6% aligned
Score =  112 bits (280), Expect = 2e-26
Identities = 67/150 (44%), Positives = 85/150 (56%), Gaps = 12/150 (8%)

pfam00364, Biotin_lipoyl, Biotin-requiring enzyme. 
CD-Length = 73 residues, 100.0% aligned
Score = 79.1 bits (195), Expect = 2e-16
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 2/75 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9051




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26193




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35204




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4525_cdd.html


    		




 
URL:

















    ReferenceID:35977




  
Author/Investigator(s):
        Best EA, Knauf VC.





  
Title:
        Organization and nucleotide sequences of the genes encoding the biotin carboxyl carrier protein and biotin carboxylase protein of Pseudomonas aeruginosa acetyl coenzyme A carboxylase.




  
PubMed:
        7693652


MedLine:
        




    
Source:
J Bacteriol. 1993 Nov;175(21):6881-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7693652









           
Homologs By Global Alignment 

           

       



     
Gene ID:4525
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6880
                           PA4847_tr
                           translation of PA4847
                           156
                           99.99
                           99.99
                           0
                           768.0
     

     
     
183906
                           gb|AAG08232.1|AE004898_3
                           (AE004898) biotin carboxyl carrier protein (BCCP) [Pseudomonas aeruginosa PAO1]
                           156
                           99.99
                           99.99
                           0
                           768.0
     

     
     
183907
                           gb|AAA16040.1|
                           (L14612) biotin carboxyl carrier protein [Pseudomonas aeruginosa]
                           156
                           99.99
                           99.99
                           0
                           768.0
     

     
     
183908
                           gb|AAO58289.1|
                           (AE016873) acetyl-CoA carboxylase, biotin carboxyl carrier protein [Pseudomonas syringae pv. tomato str. DC3000]
                           156
                           84.61
                           88.46
                           5
                           628.0
     

     
     
183909
                           gb|AAN66186.1|AE016246_3
                           (AE016776) acetyl-CoA carboxylase, biotin carboxyl carrier protein [Pseudomonas putida KT2440]
                           157
                           80.25
                           84.71
                           5
                           594.0
     

     






      

          
GC ORFID: 47527How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4847Glimmer Score: 

          
Start: 4976636Stop: 4977106

          
Length: 471


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4847 translation of PA4847Homolog Bit Score 300.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5769 (ORF: BLASTX 241.0), t_PA4847 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACATTCGTAAAGTCAAGAAACTGATCGAGCTGCTGGAAGAGTCCGGTATCGACGAGCTGGAAATCCGC 
GAAGGCGAAGAGTCGGTACGCATCAGCCGCCACAGCAAGACCGCCGCCCAGCCGGTGTACGCACAGGCTCCG 
GCCTTCGCCGCTCCGGTCGCCGCGCCGGCGCCGGCAGCCGCCGCTCCGGCCGCCGCTGCCGCGGAAAGCGCC 
CCGGCCGCTCCGAAGCTGAACGGCAACGTGGTTCGCTCGCCGATGGTCGGCACCTTCTACCGCGCCGCCTCG 
CCGACCTCGGCCAACTTCGTCGAAGTCGGCCAGAGCGTGAAGAAAGGCGACATCCTGTGCATCGTCGAAGCC 
ATGAAGATGATGAACCACATCGAAGCCGAAGTTAGCGGCACCATCGAGTCGATCCTGGTGGAGAACGGCCAG 
CCGGTTGAGTTCGACCAGCCGCTGTTCACCATCGTCTAA