ViewGene
Locus Name:
GeneID:
Location:

GeneID:4523
TrivialName: PA14_19660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19660
PAO1 Ortholog Locus:PA3435
Sequence Length:453
Protein Length:150
Start: 1696945
Stop: 1697397
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06823.1|AE004764_9 (AE004764) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 150/150 (100%), Positives = 150/150 (100%)
Sequence:
ATGAAAGTCGCCATTCTCTCCGGCTCGGTCTACGGCACCGCCGAAGAAGTCGCCCGGCACGCCCAGAAATTG
CTGTCCGCGGCCGGCCTCGAGGCCTCCCATCTGCCCCGCGCCAGCCTCGACGAACTCAAGGCCTTCGCCCCC
GAGGCATTCCTGGTGGTGACCTCGACCACCGGCATGGGCGAACTGCCGGACAACCTGCAACCGCTGTACTAC
GCGATCCGCGACCAACTGCCGGCCTGGCACGGCCTGCCGGGTGGGGTCATCGGCCTGGGCGATTCGAGCTAC
GGCGACACGTTCTGCGGTGGCGGCGAGCAGGTTCGCGAACTGTTCGGCGAACTGGGCGTGCGCGAAGTGCTG
CCGATGCTGCGCCTGGATGCCAGCGAAACCGTTACCCCCGAGACCGACGCCGAGCCTTGGCTGGCCGAGTTC
GCCGCCGCCCTCAAGGGCTGA
Translation:
MKVAILSGSVYGTAEEVARHAQKLLSAAGLEASHLPRASLDELKAFAPEAFLVVTSTTGMGELPDNLQPLYY
AIRDQLPAWHGLPGGVIGLGDSSYGDTFCGGGEQVRELFGELGVREVLPMLRLDASETVTPETDAEPWLAEF
AAALKG*
AnnotationID:4529GeneID:4523
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 17:05:06
Gene Name:
Confidence Code:3
GeneProduct:putative flavodoxin
Cell Localization:()
Synonyms:mioC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:mioC protein
Functional Category Confidence Code:5
COGs:pfam00258,COG0716
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70201.1|AE016659_7 (AE016791) mioC protein [Pseudomonas putida KT2440]
          Length = 151

 Score =  234 bits (597), Expect = 1e-61
 Identities = 117/149 (78%), Positives = 127/149 (85%), Gaps = 1/149 (0%)

>gb|AAO54713.1| (AE016860) flavodoxin [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 150

 Score =  200 bits (509), Expect = 2e-51
 Identities = 104/149 (69%), Positives = 116/149 (77%), Gaps = 1/149 (0%)








 
Structural Features:
pfam00258, Flavodoxin_1, Flavodoxin.
CD-Length = 141 residues, 100.0% aligned
Score = 68.9 bits (168), Expect = 2e-13
Identities = 48/142 (33%), Positives = 61/142 (42%), Gaps = 7/142 (4%)

COG0716, FldA, Flavodoxins [Energy production and conversion]
CD-Length = 151 residues,  99.3% aligned
Score =  108 bits (270), Expect = 4e-25
Identities = 45/152 (29%), Positives = 63/152 (41%), Gaps = 6/152 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9047




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26189




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32133




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4523_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4523
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6878
                           PA3435_tr
                           translation of PA3435
                           150
                           99.99
                           99.99
                           0
                           769.0
     

     
     
183851
                           gb|AAG06823.1|AE004764_9
                           (AE004764) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           150
                           99.99
                           99.99
                           0
                           769.0
     

     
     
183852
                           gb|AAN70201.1|AE016659_7
                           (AE016791) mioC protein [Pseudomonas putida KT2440]
                           151
                           77.48
                           84.10
                           1
                           599.0
     

     
     
183853
                           gb|AAO54713.1|
                           (AE016860) flavodoxin [Pseudomonas syringae pv. tomato str. DC3000]
                           151
                           68.87
                           76.82
                           2
                           509.0
     

     
     
183855
                           gb|AAN54677.1|AE015608_6
                           (AE015608) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           159
                           40.88
                           57.86
                           14
                           282.0
     

     






      

          
GC ORFID: 47525How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3435Glimmer Score: 

          
Start: 3256987Stop: 3256535

          
Length: 453


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3435 translation of PA3435Homolog Bit Score 300.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4350 (ORF: BLASTX 199.0), t_PA3435 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAGTCGCCATTCTCTCCGGCTCGGTCTACGGCACCGCCGAAGAAGTCGCCCGGCACGCCCAGAAATTG 
CTGTCCGCGGCCGGCCTCGAGGCCTCCCATCTGCCCCGCGCCAGCCTCGACGAACTCAAGGCCTTCGCCCCC 
GAGGCATTCCTGGTGGTGACCTCGACCACCGGCATGGGCGAACTGCCGGACAACCTGCAACCGCTGTACTAC 
GCGATCCGCGACCAACTGCCGGCCTGGCACGGCCTGCCGGGTGGGGTCATCGGCCTGGGCGATTCGAGCTAC 
GGCGACACGTTCTGCGGTGGCGGCGAGCAGGTTCGCGAACTGTTCGGCGAACTGGGCGTGCGCGAAGTGCTG 
CCGATGCTGCGCCTGGATGCCAGCGAAACCGTTACCCCCGAGACCGACGCCGAGCCTTGGCTGGCCGAGTTC 
GCCGCCGCCCTCAAGGGCTGA