ViewGene
Locus Name:
GeneID:
Location:

GeneID:4522
TrivialName: PA14_03120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03120
PAO1 Ortholog Locus:PA0253
Sequence Length:477
Protein Length:158
Start: 274488
Stop: 274012
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03642.1|AE004463_7 (AE004463) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 154/158 (97%), Positives = 155/158 (98%)
Sequence:
GTGACCGGGCCAATGACCGAGACGAACGCACTGGGGCTGCCCCAAGGCCCGCTGTACCTGATGACGGAGATC
GTCCGCCAGCGCGAACGGCAACTCACCGCCCTGCTTGCCCCTCTCGAACTGGGGCTGCATGAATGGCGTGCG
TTGCGGATCATCCACGCCTTCGACGGTGACGTGCCGATGAGCGTGCTCATCGAGCACTCGCAGACCGACCGC
ACCGCGCTGGGCCGGACCATCGAACGGCTGGTGCGGCGCGGCTGGGTCAGCCGCCTGCCGGACCCGGACGAC
GGTCGCGCCGTGCTGGTGCGCCGCAGCCCCGCGGCACAGGCGGTGTTCGAGCAGGCCCTGGCACAGGTCGCA
GGGCTCGACGAAAGGCTGCTGGCGGCTCTCGGCGCCGGCCCGGAAGAAGAGGCGCTGACCCTCGCCCTGGGC
AAGTTGCTGCGGGCCTTCGACGGGCTTTCCCGCGTGACGCAATAG
Translation:
MTGPMTETNALGLPQGPLYLMTEIVRQRERQLTALLAPLELGLHEWRALRIIHAFDGDVPMSVLIEHSQTDR
TALGRTIERLVRRGWVSRLPDPDDGRAVLVRRSPAAQAVFEQALAQVAGLDERLLAALGAGPEEEALTLALG
KLLRAFDGLSRVTQ*
AnnotationID:4528GeneID:4522
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 05:05:17
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA0253
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00347,pfam01047,pfam01047
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein
CD-Length = 101 residues,  95.0% aligned
Score = 60.6 bits (147), Expect = 9e-11
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 1/97 (1%)

pfam01047, MarR, MarR family. 
CD-Length = 104 residues,  96.2% aligned
Score = 61.7 bits (150), Expect = 3e-11
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 2/102 (1%)

COG1846, MarR, Transcriptional regulators [Transcription]
CD-Length = 126 residues,  89.7% aligned
Score = 54.5 bits (130), Expect = 5e-09
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 1/114 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:15110




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26187




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33605




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4522_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4522
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6877
                           PA0253_tr
                           translation of PA0253
                           158
                           97.46
                           98.10
                           0
                           772.0
     

     
     
183850
                           gb|AAG03642.1|AE004463_7
                           (AE004463) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           158
                           96.83
                           98.10
                           0
                           769.0
     

     






      

          
GC ORFID: 47524How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0253Glimmer Score: 

          
Start: 6075829Stop: 6075353

          
Length: 477


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0253 translation of PA0253Homolog Bit Score 301.0

          
Other Homologs:  t_PA0253 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGACCGGGCCAATGACCGAGACGAACGCACTGGGGCTGCCCCAAGGCCCGCTGTACCTGATGACGGAGATC 
GTCCGCCAGCGCGAACGGCAACTCACCGCCCTGCTTGCCCCTCTCGAACTGGGGCTGCATGAATGGCGTGCG 
TTGCGGATCATCCACGCCTTCGACGGTGACGTGCCGATGAGCGTGCTCATCGAGCACTCGCAGACCGACCGC 
ACCGCGCTGGGCCGGACCATCGAACGGCTGGTGCGGCGCGGCTGGGTCAGCCGCCTGCCGGACCCGGACGAC 
GGTCGCGCCGTGCTGGTGCGCCGCAGCCCCGCGGCACAGGCGGTGTTCGAGCAGGCCCTGGCACAGGTCGCA 
GGGCTCGACGAAAGGCTGCTGGCGGCTCTCGGCGCCGGCCCGGAAGAAGAGGCGCTGACCCTCGCCCTGGGC 
AAGTTGCTGCGGGCCTTCGACGGGCTTTCCCGCGTGACGCAATAG