ViewGene
Locus Name:
GeneID:
Location:

GeneID:4521
TrivialName: PA14_72130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72130
PAO1 Ortholog Locus:PA5465
Sequence Length:420
Protein Length:139
Start: 6428120
Stop: 6427701
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08850.1|AE004959_6 (AE004959) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 138/139 (99%), Positives = 138/139 (99%)
Sequence:
ATGCCCGAGACCCATACCGGCGGTTGCCATTGCGGCTATCTGCGCTACGCCGTCGCCGCGCCGCTGGACGAT
GTCGCTCACTGCCACTGCTCGATCTGCCGGCGCACCACCGGCGGCATCGTCACCACCTGGGCCACGGTGCCG
CGCGCGGCGTTCCGCTGGCTGGCGGGCGAAGCGGCGGAATATGCCTCGTCGGCCAGCTGCACGCGCTACTTC
TGTCCGCGTTGCGGGGCCAACCTGGCGTTGTTCACCCGGCTCAGCGCCGATACCCTGGACTTCACCGTGGCC
AGCCTCGACCATCCCGAGCGCGCCCCCGCCAACCGGCACATCTGGGTCGGCAGCCGCCTGCCATGGCTACAC
CTCGACCCGCAGTTGCCCGAAGAGGACGAGGAGTTCATCGCCGGAGCGGACGACCCGTGA
Translation:
MPETHTGGCHCGYLRYAVAAPLDDVAHCHCSICRRTTGGIVTTWATVPRAAFRWLAGEAAEYASSASCTRYF
CPRCGANLALFTRLSADTLDFTVASLDHPERAPANRHIWVGSRLPWLHLDPQLPEEDEEFIAGADDP*
AnnotationID:4527GeneID:4521
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 05:05:01
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5465
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9043




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26185




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34634




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4521_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4521
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6876
                           PA5465_tr
                           translation of PA5465
                           139
                           99.28
                           99.28
                           0
                           771.0
     

     
     
183846
                           gb|AAG08850.1|AE004959_6
                           (AE004959) hypothetical protein PA5465 [Pseudomonas aeruginosa PAO1]
                           139
                           99.28
                           99.28
                           0
                           771.0
     

     
     
183847
                           gb|AAN65782.1|AE016204_5
                           (AE016774) conserved hypothetical protein [Pseudomonas putida KT2440]
                           140
                           59.28
                           71.42
                           7
                           486.0
     

     
     
183848
                           gb|AAO53617.1|
                           (AE016856) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           139
                           56.11
                           69.06
                           7
                           453.0
     

     
     
183849
                           gb|AAQ59315.1|
                           (AE016915) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           197
                           26.39
                           31.97
                           64
                           245.0
     

     






      

          
GC ORFID: 47523How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5465Glimmer Score: 

          
Start: 5691809Stop: 5691390

          
Length: 420


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5465 translation of PA5465Homolog Bit Score 301.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3131 (ORF: BLASTX 177.0), t_PA5465 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGAGACCCATACCGGCGGTTGCCATTGCGGCTATCTGCGCTACGCCGTCGCCGCGCCGCTGGACGAT 
GTCGCTCACTGCCACTGCTCGATCTGCCGGCGCACCACCGGCGGCATCGTCACCACCTGGGCCACGGTGCCG 
CGCGCGGCGTTCCGCTGGCTGGCGGGCGAAGCGGCGGAATATGCCTCGTCGGCCAGCTGCACGCGCTACTTC 
TGTCCGCGTTGCGGGGCCAACCTGGCGTTGTTCACCCGGCTCAGCGCCGATACCCTGGACTTCACCGTGGCC 
AGCCTCGACCATCCCGAGCGCGCCCCCGCCAACCGGCACATCTGGGTCGGCAGCCGCCTGCCATGGCTACAC 
CTCGACCCGCAGTTGCCCGAAGAGGACGAGGAGTTCATCGCCGGAGCGGACGACCCGTGA