ViewGene
Locus Name:
GeneID:
Location:

GeneID:452
TrivialName: PA14_35290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35290
PAO1 Ortholog Locus:PA2265
Sequence Length:1776
Protein Length:591
Start: 3139038
Stop: 3137263
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05653.1|AE004652_6 (AE004652) gluconate dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 591/591 (100%), Positives = 591/591 (100%)
Sequence:
ATGGCGACGACACTCAAACCGGTGGACGCGGTGGTGGTCGGCTTCGGCTGGACCGGAGCGATCCTGGCCAAG
GAGCTGACCGAGGCCGGGCTCAACGTGGTGGCGCTGGAGCGCGGCGAGAACCGCGATACCTATCCCGACGGC
GCCTACCCGAACACCCTCGACGAGCTGACCTACAACACACGCGGCAAGCTGTTCCAGAATCTCTCCAAGAGC
ACCGTGAGCATCCGCCACGGGATCAACGACACCGCGCTGCCCTACCGTCAGCTCTCCGCCTTCCTTCCCGGC
GACGGCGTCGGTGGCGCCGGCCTGCACTGGTCCGGCGTGCATTTCCGGATCATGCCCGAGGAACTGCGCCTG
CGCAGTCACTACGAGGAACGCTACGGCAAGAAATTCATCCCCGAAGGCATGACCATCCAGGACTACGGGGTC
AGCTACGAAGAGCTGGAGCCGCACTTCGATTTCGCCGAGAAGGTCTTCGGCACCTCCGGCACCGCGCATACG
GTCAAGGGCCAGGTGGTCGGCAAGGGCAATCCGTTCGCCGCCGACCGCTCGGACGACTTCCCGCTGCCGGCG
CTGCGCCAGGTGTACTCCGCGCAACTGTTCCGCAAGGCCGCCGAGGAACTCGGCCTGCACCCCTACGACCTG
CCGGCGGCCAACGCTTCGGGGCCCTGGACCAACCCCTACGGGGTGCAGATGGGGCCGTGCAACTTCTGCGGC
TTCTGCAGCGGCTACGCTTGCTACATGTATTCCAAGGCCTCGCCGAACCTGAACATCCTGCCGGCGCTGCGC
CAGACCCCGCTGTTCGAACTGCGCGCCAACTGCAACGTGCTCAAGGTCAACCTCGACAGCGACGGCAGGCAG
GCCACCGGCGTGACCTACGTCGACGCCCAGGGGCGCGAGATCGTGCAGCCGGCGAAGCTGGTGATCATCAGT
GCCTTCCAGTTCCACAACGTGCGCCTGCTGCTGCTCTCCGGCATCGGCAAGCCCTATGACCCGCGCACCGGC
GAGGGCGTGGTGGGGAAGAACTTCGCCTACCAGAACATGGCCACCATCAAGGCGTTCTTCGACAAGGACGTG
CATACCAACCCCTTCGTCGGCACCGGCGGCGGCGGCGTGGCGGTGGACGACTTCAACGCCGACAACTTCGAC
CACGGACCGCTGGGCTTCGTCGGCGGCTCGCCGATGTGGGTCAACCAGGCCGGCTCCAAGCCGATCGGCGGC
CTCGCCGTGCCGCCCGGCACGCCGAGCTGGGGCAGCGGCTGGAAACAGGCGGTCAAGGACGCCTACACGCAC
ACCGTGTCGATGGACGCCCACGGCAGCAACATGACCTACCGCGACAACTACCTCGACCTCGACCCGACCTAC
AAGGACGCCTACGGCCAGCCACTGCTGCGCATGACCTTCGACTGGAAGGACAACGAGATCCGCATGAGCCGC
TACGTCACCGAGCACATGCGCAAGATCGCCGAGGCGATGAACCCGAAGGCCATCTCGGTGAGCGTCAAGAAC
TTCGGCGACCACTTCAATACACGGGTCTACCAGACCACCCACCTGCTCGGCGGGGCGATCATGGGCAGCGAT
CCGAAGACCAGCGTGCTCAACCGCTACCTGCAGAGCTGGGACGTGCACAATGTCTTCGTCATGGGCGCCTCG
GCCTTCCCCCAGGGCACCGGCTACAACCCCACTGGGCTGGTGGCGGCGCTGGCCTACTGGTCGGCCAAGGCG
ATCCGCGAGCAATACCTGAAGAACCCCGGTCCGCTGGTGCAGGCATGA
Translation:
MATTLKPVDAVVVGFGWTGAILAKELTEAGLNVVALERGENRDTYPDGAYPNTLDELTYNTRGKLFQNLSKS
TVSIRHGINDTALPYRQLSAFLPGDGVGGAGLHWSGVHFRIMPEELRLRSHYEERYGKKFIPEGMTIQDYGV
SYEELEPHFDFAEKVFGTSGTAHTVKGQVVGKGNPFAADRSDDFPLPALRQVYSAQLFRKAAEELGLHPYDL
PAANASGPWTNPYGVQMGPCNFCGFCSGYACYMYSKASPNLNILPALRQTPLFELRANCNVLKVNLDSDGRQ
ATGVTYVDAQGREIVQPAKLVIISAFQFHNVRLLLLSGIGKPYDPRTGEGVVGKNFAYQNMATIKAFFDKDV
HTNPFVGTGGGGVAVDDFNADNFDHGPLGFVGGSPMWVNQAGSKPIGGLAVPPGTPSWGSGWKQAVKDAYTH
TVSMDAHGSNMTYRDNYLDLDPTYKDAYGQPLLRMTFDWKDNEIRMSRYVTEHMRKIAEAMNPKAISVSVKN
FGDHFNTRVYQTTHLLGGAIMGSDPKTSVLNRYLQSWDVHNVFVMGASAFPQGTGYNPTGLVAALAYWSAKA
IREQYLKNPGPLVQA*
AnnotationID:461GeneID:452
AnnotatorUID: diggins
Modification Date/Time: 2005-04-29 07:07:15
Gene Name:gnd
Confidence Code:2
GeneProduct: gluconate dehydrogenase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2303
Secondary Functional Category(ies):
EC Number:1.1.1.44
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68987.1|AE016530_10 (AE016786) gluconate dehydrogenase, putative [Pseudomonas putida
           KT2440]
          Length = 594

 Score =  957 bits (2474), Expect = 0.0
 Identities = 450/594 (75%), Positives = 514/594 (86%), Gaps = 3/594 (0%)

>gb|AAC45885.1| (U97665) dehydrogenase subunit precursor [Pectobacterium
           cypripedii]
          Length = 615

 Score =  939 bits (2428), Expect = 0.0
 Identities = 444/594 (74%), Positives = 504/594 (84%), Gaps = 3/594 (0%)

>emb|CAE31973.1| (BX640441) Putative gluconate dehydrogenase [Bordetella
           bronchiseptica]
          Length = 589

 Score =  635 bits (1637), Expect = 0.0
 Identities = 301/590 (51%), Positives = 403/590 (68%), Gaps = 2/590 (0%)






 
Structural Features:
COG2303, BetA, Choline dehydrogenase and related flavoproteins 
[Amino acid transport and metabolism]
CD-Length = 542 residues,  98.7% aligned
Score =  282 bits (723), Expect = 7e-77
Identities = 131/591 (22%), Positives = 195/591 (32%), Gaps = 68/591 (11%)







   
Genomic Context:






   
Comment:


















    ReferenceID:907




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18049




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32515




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:452_cdd.html


    		




 
URL:

















    ReferenceID:38110




  
Author/Investigator(s):
        Nasoff MS, Baker HV 2nd, Wolf RE Jr.





  
Title:
        DNA sequence of the Escherichia coli gene, gnd, for 6-phosphogluconate dehydrogenase.




  
PubMed:
        6329905


MedLine:
        




    
Source:
Gene. 1984 Mar;27(3):253-64.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=6329905

















    ReferenceID:38111




  
Author/Investigator(s):
        Reeves P, Stevenson G.





  
Title:
        Cloning and nucleotide sequence of the Salmonella typhimurium LT2 gnd gene and its homology with the corresponding sequence of Escherichia coli K12.




  
PubMed:
        2671649


MedLine:
        




    
Source:
Mol Gen Genet. 1989 May;217(1):182-4.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2671649









           
Homologs By Global Alignment 

           

       



     
Gene ID:452
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
774
                           PA2265_tr
                           translation of PA2265
                           591
                           99.99
                           99.99
                           0
                           3169.0
     

     
     
33850
                           gb|AAG05653.1|AE004652_6
                           (AE004652) gluconate dehydrogenase [Pseudomonas aeruginosa PAO1]
                           591
                           99.99
                           99.99
                           0
                           3169.0
     

     
     
33851
                           gb|AAN68987.1|AE016530_10
                           (AE016786) gluconate dehydrogenase, putative [Pseudomonas putida KT2440]
                           594
                           75.75
                           86.53
                           3
                           2477.0
     

     
     
33852
                           gb|AAC45885.1|
                           (U97665) dehydrogenase subunit precursor [Pectobacterium cypripedii]
                           615
                           72.19
                           81.95
                           24
                           2431.0
     

     
     
33853
                           emb|CAE31973.1|
                           (BX640441) Putative gluconate dehydrogenase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           592
                           50.84
                           68.07
                           4
                           1641.0
     

     






      

          
GC ORFID: 43454How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2265Glimmer Score: 

          
Start: 1814878Stop: 1816653

          
Length: 1776


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2265 translation of PA2265Homolog Bit Score 1225.0

          
Other Homologs:  t_PA2265 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCGACGACACTCAAACCGGTGGACGCGGTGGTGGTCGGCTTCGGCTGGACCGGAGCGATCCTGGCCAAG 
GAGCTGACCGAGGCCGGGCTCAACGTGGTGGCGCTGGAGCGCGGCGAGAACCGCGATACCTATCCCGACGGC 
GCCTACCCGAACACCCTCGACGAGCTGACCTACAACACACGCGGCAAGCTGTTCCAGAATCTCTCCAAGAGC 
ACCGTGAGCATCCGCCACGGGATCAACGACACCGCGCTGCCCTACCGTCAGCTCTCCGCCTTCCTTCCCGGC 
GACGGCGTCGGTGGCGCCGGCCTGCACTGGTCCGGCGTGCATTTCCGGATCATGCCCGAGGAACTGCGCCTG 
CGCAGTCACTACGAGGAACGCTACGGCAAGAAATTCATCCCCGAAGGCATGACCATCCAGGACTACGGGGTC 
AGCTACGAAGAGCTGGAGCCGCACTTCGATTTCGCCGAGAAGGTCTTCGGCACCTCCGGCACCGCGCATACG 
GTCAAGGGCCAGGTGGTCGGCAAGGGCAATCCGTTCGCCGCCGACCGCTCGGACGACTTCCCGCTGCCGGCG 
CTGCGCCAGGTGTACTCCGCGCAACTGTTCCGCAAGGCCGCCGAGGAACTCGGCCTGCACCCCTACGACCTG 
CCGGCGGCCAACGCTTCGGGGCCCTGGACCAACCCCTACGGGGTGCAGATGGGGCCGTGCAACTTCTGCGGC 
TTCTGCAGCGGCTACGCTTGCTACATGTATTCCAAGGCCTCGCCGAACCTGAACATCCTGCCGGCGCTGCGC 
CAGACCCCGCTGTTCGAACTGCGCGCCAACTGCAACGTGCTCAAGGTCAACCTCGACAGCGACGGCAGGCAG 
GCCACCGGCGTGACCTACGTCGACGCCCAGGGGCGCGAGATCGTGCAGCCGGCGAAGCTGGTGATCATCAGT 
GCCTTCCAGTTCCACAACGTGCGCCTGCTGCTGCTCTCCGGCATCGGCAAGCCCTATGACCCGCGCACCGGC 
GAGGGCGTGGTGGGGAAGAACTTCGCCTACCAGAACATGGCCACCATCAAGGCGTTCTTCGACAAGGACGTG 
CATACCAACCCCTTCGTCGGCACCGGCGGCGGCGGCGTGGCGGTGGACGACTTCAACGCCGACAACTTCGAC 
CACGGACCGCTGGGCTTCGTCGGCGGCTCGCCGATGTGGGTCAACCAGGCCGGCTCCAAGCCGATCGGCGGC 
CTCGCCGTGCCGCCCGGCACGCCGAGCTGGGGCAGCGGCTGGAAACAGGCGGTCAAGGACGCCTACACGCAC 
ACCGTGTCGATGGACGCCCACGGCAGCAACATGACCTACCGCGACAACTACCTCGACCTCGACCCGACCTAC 
AAGGACGCCTACGGCCAGCCACTGCTGCGCATGACCTTCGACTGGAAGGACAACGAGATCCGCATGAGCCGC 
TACGTCACCGAGCACATGCGCAAGATCGCCGAGGCGATGAACCCGAAGGCCATCTCGGTGAGCGTCAAGAAC 
TTCGGCGACCACTTCAATACACGGGTCTACCAGACCACCCACCTGCTCGGCGGGGCGATCATGGGCAGCGAT 
CCGAAGACCAGCGTGCTCAACCGCTACCTGCAGAGCTGGGACGTGCACAATGTCTTCGTCATGGGCGCCTCG 
GCCTTCCCCCAGGGCACCGGCTACAACCCCACTGGGCTGGTGGCGGCGCTGGCCTACTGGTCGGCCAAGGCG 
ATCCGCGAGCAATACCTGAAGAACCCCGGTCCGCTGGTGCAGGCATGA