ViewGene
Locus Name:
GeneID:
Location:

GeneID:4518
TrivialName: PA14_64320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64320
PAO1 Ortholog Locus:PA4863
Sequence Length:453
Protein Length:150
Start: 5732966
Stop: 5733418
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08248.1|AE004900_2 (AE004900) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 150/150 (100%), Positives = 150/150 (100%)
Sequence:
ATGACCGTCACTCTGCGCCCGGCCGTCCAGGCCGACGCGGGCTTCGCCGCGCTCTGCGTCGCCGCCGCCTAT
GCCCCGTGGATCGCGGTGATCGGCCGCAAACCCTGGCCGATGACCCAGGACTACCACGAGGTGATCGCCAGC
GACCGGGTCCTCATCGCCGAGCACGACGGCCAGCCGGTCGGCCTGCTGGTGACCCGGGAAACCGCCGACGGC
TTCCTCGTCGACAACCTCGCCGTGCTTCCCGAATGCAAGGGCCAGGGCATCGGCCGACAGCTGCTGGAACGC
GCCGAGCGCGACGCGACGAGCCTCGGCTACCGCTCGCTGTACCTCTACACCAACGAGCGGATGACGGAAAAC
ATCGCGCTCTACGCCAGGGTCGGCTACCTCGAATACGAACGCCGCCAGGAAGAGGGATTCCGCCGCGTGTTC
ATGCGCAAGGCCCTGGCCTGA
Translation:
MTVTLRPAVQADAGFAALCVAAAYAPWIAVIGRKPWPMTQDYHEVIASDRVLIAEHDGQPVGLLVTRETADG
FLVDNLAVLPECKGQGIGRQLLERAERDATSLGYRSLYLYTNERMTENIALYARVGYLEYERRQEEGFRRVF
MRKALA*
AnnotationID:4524GeneID:4518
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 11:11:04
Gene Name:
Confidence Code:3
GeneProduct:putative acetyltransferase
Cell Localization:()
Synonyms:PA4863
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family.
CD-Length = 82 residues,  98.8% aligned
Score = 56.4 bits (136), Expect = 1e-09
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 3/81 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9037




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26179




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35177




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4518_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4518
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6873
                           PA4863_tr
                           translation of PA4863
                           150
                           99.99
                           99.99
                           0
                           772.0
     

     
     
183772
                           gb|AAG08248.1|AE004900_2
                           (AE004900) hypothetical protein PA4863 [Pseudomonas aeruginosa PAO1]
                           150
                           99.99
                           99.99
                           0
                           772.0
     

     






      

          
GC ORFID: 47520How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4863Glimmer Score: 

          
Start: 4996646Stop: 4997098

          
Length: 453


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4863 translation of PA4863Homolog Bit Score 301.0

          
Other Homologs:  t_PA4863 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGTCACTCTGCGCCCGGCCGTCCAGGCCGACGCGGGCTTCGCCGCGCTCTGCGTCGCCGCCGCCTAT 
GCCCCGTGGATCGCGGTGATCGGCCGCAAACCCTGGCCGATGACCCAGGACTACCACGAGGTGATCGCCAGC 
GACCGGGTCCTCATCGCCGAGCACGACGGCCAGCCGGTCGGCCTGCTGGTGACCCGGGAAACCGCCGACGGC 
TTCCTCGTCGACAACCTCGCCGTGCTTCCCGAATGCAAGGGCCAGGGCATCGGCCGACAGCTGCTGGAACGC 
GCCGAGCGCGACGCGACGAGCCTCGGCTACCGCTCGCTGTACCTCTACACCAACGAGCGGATGACGGAAAAC 
ATCGCGCTCTACGCCAGGGTCGGCTACCTCGAATACGAACGCCGCCAGGAAGAGGGATTCCGCCGCGTGTTC 
ATGCGCAAGGCCCTGGCCTGA