ViewGene
Locus Name:
GeneID:
Location:

GeneID:4516
TrivialName: PA14_58820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58820
PAO1 Ortholog Locus:PA4533
Sequence Length:471
Protein Length:156
Start: 5240391
Stop: 5239921
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07921.1|AE004867_7 (AE004867) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 155/156 (99%), Positives = 155/156 (99%)
Sequence:
GTGAAACGATTGCATTGGGTTCTGCTGGGCATGCTGCTGCCCGGCCTGGCGCTGGCCGTGGAGAAGGGCTCC
ACCCTGGAGCCCTGGACGTTGCAGGACCAGTTCGAAAAGGCGCACTCGCTGGACGACTCCACCCGGGTCCTG
CTGGTGGCGCGGGACATGGACGGCTCGAAGCTGGTCAAGGCGGCGCTGGCGGAGCGCCCAAAGGGCTACCTG
GAGGCGCGCCACGCGCTGTTCCTGGCGGACATCAGCCGCATGCCGGCGCTGATTTCCCGGCTTTTCGCGGTG
CCGGCCATGCGTGACTACAGTTATCCGGTGCTGCTCGATCGCGACGCGGCCATCGCTTCTCGCTATGCCTCG
GACGAGGGCAAGGTGCTCTGGGTCAGGCTGGAGCAGCGCCGCGTGTTGGAAACCCGCCAGTTGGATTCGCCG
GTGGCCCTGCGCATCGCCCTGGAACAACTGCAGCCGTGA
Translation:
MKRLHWVLLGMLLPGLALAVEKGSTLEPWTLQDQFEKAHSLDDSTRVLLVARDMDGSKLVKAALAERPKGYL
EARHALFLADISRMPALISRLFAVPAMRDYSYPVLLDRDAAIASRYASDEGKVLWVRLEQRRVLETRQLDSP
VALRIALEQLQP*
AnnotationID:4522GeneID:4516
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 17:05:41
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4533
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15108




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26175




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4516
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6871
                           PA4533_tr
                           translation of PA4533
                           156
                           99.35
                           99.35
                           0
                           772.0
     

     
     
183712
                           gb|AAG07921.1|AE004867_7
                           (AE004867) hypothetical protein PA4533 [Pseudomonas aeruginosa PAO1]
                           156
                           98.71
                           99.35
                           0
                           769.0
     

     
     
183713
                           gb|AAN69126.1|AE016546_7
                           (AE016787) conserved hypothetical protein [Pseudomonas putida KT2440]
                           159
                           58.49
                           73.58
                           3
                           442.0
     

     






      

          
GC ORFID: 47518How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4533Glimmer Score: 

          
Start: 4504070Stop: 4503600

          
Length: 471


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4533 translation of PA4533Homolog Bit Score 301.0

          
Other Homologs:  psyr_15may02_Scaffold15_revised_gene2470 (ORF: BLASTX 154.0), t_PA4533 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAAACGATTGCATTGGGTTCTGCTGGGCATGCTGCTGCCCGGCCTGGCGCTGGCCGTGGAGAAGGGCTCC 
ACCCTGGAGCCCTGGACGTTGCAGGACCAGTTCGAAAAGGCGCACTCGCTGGACGACTCCACCCGGGTCCTG 
CTGGTGGCGCGGGACATGGACGGCTCGAAGCTGGTCAAGGCGGCGCTGGCGGAGCGCCCAAAGGGCTACCTG 
GAGGCGCGCCACGCGCTGTTCCTGGCGGACATCAGCCGCATGCCGGCGCTGATTTCCCGGCTTTTCGCGGTG 
CCGGCCATGCGTGACTACAGTTATCCGGTGCTGCTCGATCGCGACGCGGCCATCGCTTCTCGCTATGCCTCG 
GACGAGGGCAAGGTGCTCTGGGTCAGGCTGGAGCAGCGCCGCGTGTTGGAAACCCGCCAGTTGGATTCGCCG 
GTGGCCCTGCGCATCGCCCTGGAACAACTGCAGCCGTGA