ViewGene
Locus Name:
GeneID:
Location:

GeneID:4515
TrivialName: PA14_58850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58850
PAO1 Ortholog Locus:PA4536
Sequence Length:450
Protein Length:149
Start: 5241572
Stop: 5242021
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07924.1|AE004867_10 (AE004867) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 148/149 (99%), Positives = 148/149 (99%)
Sequence:
GTGAGCGAAGGGCGGGTGAAGTGGATCGGCGTGCGCTCCGGCAGCCGCGCGCCGATCCAGGAACTGGAGGCG
GTGGAGGCACGGCGCGGCCTGGGACTGACGGGCGACCACCCGCACCCGCCGCGCCAGGTCACCCTGGTGCAG
TGGGAACACATCGAGGCCCTCGGTACCCTGCTGGGCAGGCCGCTGTTGCCCAACGAGATGCGCCGCAACATC
GCCGTCGCCGGCATCAACCTGCTCAGCCTGAAGGACCGTCGCTTCCGCCTCGGCGGCGCGCTGCTGGAAACC
ATTGGCTGGTACCAACCCTGCGGACGCCTGGAAAAGCACATCGACCACCGCACGCTGAAAAGCGTGCGCGAA
CAGGGCGGCATCACCGCGCGGGTGATCGGCAGCGGAGTGATCCGCCTCGACGATCCGCTGGTGATCGAGCCC
CCTGTCTGTCTAGAATGA
Translation:
MSEGRVKWIGVRSGSRAPIQELEAVEARRGLGLTGDHPHPPRQVTLVQWEHIEALGTLLGRPLLPNEMRRNI
AVAGINLLSLKDRRFRLGGALLETIGWYQPCGRLEKHIDHRTLKSVREQGGITARVIGSGVIRLDDPLVIEP
PVCLE*
AnnotationID:4521GeneID:4515
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 17:05:38
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4536
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54453.1| (AE016859) MOSC domain protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 174

 Score =  175 bits (444), Expect = 6e-44
 Identities = 85/149 (57%), Positives = 111/149 (74%), Gaps = 8/149 (5%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15106




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26173




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31578




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4515_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4515
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6870
                           PA4536_tr
                           translation of PA4536
                           149
                           99.32
                           99.32
                           0
                           772.0
     

     
     
183710
                           gb|AAG07924.1|AE004867_10
                           (AE004867) hypothetical protein PA4536 [Pseudomonas aeruginosa PAO1]
                           149
                           98.65
                           99.32
                           0
                           769.0
     

     
     
183711
                           gb|AAO54453.1|
                           (AE016859) MOSC domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           177
                           49.15
                           63.84
                           31
                           447.0
     

     






      

          
GC ORFID: 47517How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4536Glimmer Score: 

          
Start: 4505251Stop: 4505700

          
Length: 450


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4536 translation of PA4536Homolog Bit Score 301.0

          
Other Homologs:  psyr_15may02_Scaffold15_revised_gene2541 (ORF: BLASTX 178.0), t_PA4536 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGCGAAGGGCGGGTGAAGTGGATCGGCGTGCGCTCCGGCAGCCGCGCGCCGATCCAGGAACTGGAGGCG 
GTGGAGGCACGGCGCGGCCTGGGACTGACGGGCGACCACCCGCACCCGCCGCGCCAGGTCACCCTGGTGCAG 
TGGGAACACATCGAGGCCCTCGGTACCCTGCTGGGCAGGCCGCTGTTGCCCAACGAGATGCGCCGCAACATC 
GCCGTCGCCGGCATCAACCTGCTCAGCCTGAAGGACCGTCGCTTCCGCCTCGGCGGCGCGCTGCTGGAAACC 
ATTGGCTGGTACCAACCCTGCGGACGCCTGGAAAAGCACATCGACCACCGCACGCTGAAAAGCGTGCGCGAA 
CAGGGCGGCATCACCGCGCGGGTGATCGGCAGCGGAGTGATCCGCCTCGACGATCCGCTGGTGATCGAGCCC 
CCTGTCTGTCTAGAATGA