ViewGene

Locus Name:
GeneID:
Location:

GeneID: 4514

TrivialName: PA14_57850

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_57850

PAO1 Ortholog Locus: PA4454

Sequence Length: 474

Protein Length: 157

Start: 5150875

Stop: 5150402

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG07842.1|AE004859_11 (AE004859) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 157/157 (100%), Positives = 157/157 (100%)

Sequence:

ATGCAAACCCGCACCCTGGAAATCGGTGTCGGCCTGTTCCTCCTGGCCGGCCTGCTGGCCCTGTTGCTGCTG
GCCCTGCGGGTCAGCGGCCTGAGCGTGGGCAACGCCGGCGATACCTACAAGGTCTACGCCTACTTCGACAAC
ATCGCCGGTGTTACCGTGCGCGGCAAGGTCACCCTGGCCGGCGTGACGATCGGCAAGGTGACGGCGGTCGAC
CTGGATCGCGACAGCTACACTGGTCGCGTGACCATGGAGATCAACCAGAACGTGAACAACCTGCCGGTCGAT
TCCACGGCGTCGATCCTGACCGCCGGCCTGCTGGGCGAGAAATACATCGGCATCAGCGTCGGCGGCGACGAG
GACGTTCTGAAGGACGGCAGCACCATCCACGACACCCAGTCGGCGCTGGTGCTGGAAGACCTGATCGGCAAG
TTCCTGCTGAACTCGGTTAACAAAGACGAAGCCAAAAAGTGA

Translation:

MQTRTLEIGVGLFLLAGLLALLLLALRVSGLSVGNAGDTYKVYAYFDNIAGVTVRGKVTLAGVTIGKVTAVD
LDRDSYTGRVTMEINQNVNNLPVDSTASILTAGLLGEKYIGISVGGDEDVLKDGSTIHDTQSALVLEDLIGK
FLLNSVNKDEAKK*

AnnotationID:4520 GeneID:4514

AnnotatorUID: diggins

Modification Date/Time: 2005-05-03 06:06:18

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA4454

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:9029

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:26171

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:31493

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 4514_cdd.html

URL:

Homologs By Global Alignment

Gene ID:4514

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

6869 PA4454_tr translation of PA4454 157 99.99 99.99 0 770.0

183675 gb|AAG07842.1|AE004859_11 (AE004859) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 157 99.99 99.99 0 770.0

183676 gb|AAN66585.1|AE016286_9 (AE016777) toluene tolerance ABC transporter, periplasmic substrate-binding protein [Pseudomonas putida KT2440] 161 80.74 91.92 4 648.0

183677 dbj|BAB83591.1| (AB066294) hypothetical protein [Pseudomonas putida] 161 80.74 91.92 4 648.0

183678 gb|AAD17959.1| (AF106002) toluene tolerance protein Ttg2C [Pseudomonas putida] 161 80.74 90.68 4 645.0

GC ORFID: `47516`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA4454`	Glimmer Score:
Start: `4414554`	Stop: `4414081`
Length: `474`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA4454 translation of PA4454`	Homolog Bit Score `301.0`
Other Homologs: `psyr_15may02_Scaffold4_revised_gene5521 (ORF: BLASTX 242.0), t_PA4454 (ORF: GLIMMER)`
GC ORF Sequence
`ATGCAAACCCGCACCCTGGAAATCGGTGTCGGCCTGTTCCTCCTGGCCGGCCTGCTGGCCCTGTTGCTGCTG GCCCTGCGGGTCAGCGGCCTGAGCGTGGGCAACGCCGGCGATACCTACAAGGTCTACGCCTACTTCGACAAC ATCGCCGGTGTTACCGTGCGCGGCAAGGTCACCCTGGCCGGCGTGACGATCGGCAAGGTGACGGCGGTCGAC CTGGATCGCGACAGCTACACTGGTCGCGTGACCATGGAGATCAACCAGAACGTGAACAACCTGCCGGTCGAT TCCACGGCGTCGATCCTGACCGCCGGCCTGCTGGGCGAGAAATACATCGGCATCAGCGTCGGCGGCGACGAG GACGTTCTGAAGGACGGCAGCACCATCCACGACACCCAGTCGGCGCTGGTGCTGGAAGACCTGATCGGCAAG TTCCTGCTGAACTCGGTTAACAAAGACGAAGCCAAAAAGTGA`