ViewGene
Locus Name:
GeneID:
Location:

GeneID:4513
TrivialName: PA14_57030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57030
PAO1 Ortholog Locus:PA4387
Sequence Length:468
Protein Length:155
Start: 5081685
Stop: 5081218
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07775.1|AE004854_11 (AE004854) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 155/155 (100%), Positives = 155/155 (100%)
Sequence:
ATGCGCGCTTTCCTCTTTCTGCTGTTGCTCTTCCCGCTGGTCGAGCTGGCCGTCCTGATCAAGGTCGGCAGT
GTCATCGGGGTCGGCTGGACCCTGTTCCTGATCGTCGCCAGCGCCTTCATCGGTGCCGCATTGTTGCGCGTG
GCCGGTGTGGCCACCGCCTGGCGCGCCCGCGAACGACTGGCCCGTGGCGAACTGCCGGAGCAGGAAATGCTC
GAAGGCCTGTTGATCGCCGTCGGCGGCGGCCTGCTGATGCTGCCGGGTTTCATCAGCGACATCTTCGGCATC
CTCTGCCTGATTCCTTTCACCCGTCGCCTGATGCTCGGCGGCCTGCGCCGCCGCGTCGAACAGCAGGCGCTG
CGCCGGCGCGCCTTTGCCGACGACCTGAACGCCCGCTACGGACAGGGTCCGTCGCGGCCGAACGTCATCGAG
GGCGAGTACGAGCGCCGCGACGATTCGCGCAACTGA
Translation:
MRAFLFLLLLFPLVELAVLIKVGSVIGVGWTLFLIVASAFIGAALLRVAGVATAWRARERLARGELPEQEML
EGLLIAVGGGLLMLPGFISDIFGILCLIPFTRRLMLGGLRRRVEQQALRRRAFADDLNARYGQGPSRPNVIE
GEYERRDDSRN*
AnnotationID:4519GeneID:4513
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 12:12:52
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA4387
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3030,pfam04186
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57829.1| (AE016871) cytoplasmic membrane family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 164

 Score =  192 bits (487), Expect = 7e-49
 Identities = 96/163 (58%), Positives = 122/163 (74%), Gaps = 12/163 (7%)

>gb|AAN53776.1|AE015515_9 (AE015515) fxsA protein [Shewanella oneidensis MR-1]
          Length = 187

 Score =  108 bits (270), Expect = 1e-23
 Identities = 60/170 (35%), Positives = 105/170 (61%), Gaps = 18/170 (10%)







 
Structural Features:
COG3030, FxsA, Protein affecting phage T7 exclusion by the F plasmid
CD-Length = 158 residues,  99.4% aligned
Score =  138 bits (348), Expect = 8e-34
Identities = 68/157 (43%), Positives = 97/157 (61%), Gaps = 3/157 (1%)

pfam04186, FxsA, FxsA cytoplasmic membrane protein.
CD-Length = 122 residues, 100.0% aligned
Score =  126 bits (319), Expect = 2e-30
Identities = 65/122 (53%), Positives = 86/122 (70%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9027




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17144




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4513_cdd.html


    		




 
URL:

















    ReferenceID:26169




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4513
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6868
                           PA4387_tr
                           translation of PA4387
                           155
                           99.99
                           99.99
                           0
                           772.0
     

     
     
183672
                           gb|AAG07775.1|AE004854_11
                           (AE004854) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           155
                           99.99
                           99.99
                           0
                           772.0
     

     
     
183673
                           gb|AAO57829.1|
                           (AE016871) cytoplasmic membrane family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           167
                           58.68
                           73.65
                           15
                           494.0
     

     
     
183674
                           gb|AAN66982.1|AE016326_8
                           (AE016779) conserved hypothetical protein [Pseudomonas putida KT2440]
                           156
                           58.33
                           74.35
                           4
                           459.0
     

     






      

          
GC ORFID: 47515How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4387Glimmer Score: 

          
Start: 4345361Stop: 4344894

          
Length: 468


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4387 translation of PA4387Homolog Bit Score 301.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene2054 (ORF: BLASTX 187.0), t_PA4387 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCGCTTTCCTCTTTCTGCTGTTGCTCTTCCCGCTGGTCGAGCTGGCCGTCCTGATCAAGGTCGGCAGT 
GTCATCGGGGTCGGCTGGACCCTGTTCCTGATCGTCGCCAGCGCCTTCATCGGTGCCGCATTGTTGCGCGTG 
GCCGGTGTGGCCACCGCCTGGCGCGCCCGCGAACGACTGGCCCGTGGCGAACTGCCGGAGCAGGAAATGCTC 
GAAGGCCTGTTGATCGCCGTCGGCGGCGGCCTGCTGATGCTGCCGGGTTTCATCAGCGACATCTTCGGCATC 
CTCTGCCTGATTCCTTTCACCCGTCGCCTGATGCTCGGCGGCCTGCGCCGCCGCGTCGAACAGCAGGCGCTG 
CGCCGGCGCGCCTTTGCCGACGACCTGAACGCCCGCTACGGACAGGGTCCGTCGCGGCCGAACGTCATCGAG 
GGCGAGTACGAGCGCCGCGACGATTCGCGCAACTGA