ViewGene
Locus Name:
GeneID:
Location:

GeneID:4512
TrivialName: PA14_11430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11430
PAO1 Ortholog Locus:PA4053
Sequence Length:477
Protein Length:158
Start: 991885
Stop: 992361
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07440.1|AE004821_13 (AE004821) 6,7-dimethyl-8-ribityllumazine synthase [Pseudomonas aeruginosa PAO1]
Identities = 158/158 (100%), Positives = 158/158 (100%)
Sequence:
ATGACCCTGAAGACCATCGAAGGTACCTTCATTGCTCCCAAAGGCCGCTACGCCCTGGTGGTCGGCCGCTTC
AACAGCTTCGTCGTGGAAAGCCTGGTCAGCGGCGCCGTCGACGCCCTGGTCCGCCACGGCGTGGCTGAAAGC
GAGATCACCATCATCCGCGCCCCGGGTGCCTTCGAGATCCCGCTGGTGACCCAGAAGGTCGCCCAGCAAGGC
GGCTTCGACGCCATCATCGCCCTCGGCGCGGTGATCCGTGGCGGCACCCCGCACTTCGAATACGTGGCCGGC
GAGTGCACCAAGGGCCTGGCCCAGGTGTCCCTGCAGTTCGGCATCCCGGTCGCCTTCGGCGTCCTCACCGTC
GACTCCATCGAGCAGGCCATCGAGCGCTCCGGCACCAAGGCCGGCAACAAGGGCGCCGAAGCCGCGCTGTCG
GCCCTGGAAATGGTCAGCCTGCTGGCGCAGTTGGAGGCCAAGTGA
Translation:
MTLKTIEGTFIAPKGRYALVVGRFNSFVVESLVSGAVDALVRHGVAESEITIIRAPGAFEIPLVTQKVAQQG
GFDAIIALGAVIRGGTPHFEYVAGECTKGLAQVSLQFGIPVAFGVLTVDSIEQAIERSGTKAGNKGAEAALS
ALEMVSLLAQLEAK*
AnnotationID:4518GeneID:4512
AnnotatorUID: urbach
Modification Date/Time: 2004-10-06 18:06:09
Gene Name:ribE
Confidence Code:2
GeneProduct:6,7-dimethyl-8-ribityllumazine synthase
Cell Localization:()
Synonyms:PA4053
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0054,pfam00885,KOG3243
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
183540  dbj|BAC44852.1|  (AB065118) lumazine synthase [Photobacterium phosphoreum]
Length: 159
PctIdentity: 67.29
PctSimilarity: 84.27
Gaps: 4
BitScore: 556.0






 
Structural Features:
gnl|CDD|9929 COG0054, RibH, Riboflavin synthase beta-chain [Coenzyme metabolism]
Length = 152
Score =  201 bits (513), Expect = 6e-53
Identities = 90/152 (59%), Positives = 114/152 (75%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9025




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26167




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34657




  
Author/Investigator(s):
        Kasai S, Sumimoto T.





  
Title:
        Stimulated biosynthesis of flavins in Photobacterium phosphoreum IFO 13896 and the presence of complete rib operons in two species of luminous bacteria.




  
PubMed:
        12444973


MedLine:
        22335717




    
Source:
Eur J Biochem. 2002 Dec;269(23):5851-60.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&list_uids=22335717&dopt=Citation









           
Homologs By Global Alignment 

           

       



     
Gene ID:4512
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6867
                           PA4053_tr
                           translation of PA4053
                           158
                           99.99
                           99.99
                           0
                           771.0
     

     
     
183537
                           gb|AAG07440.1|AE004821_13
                           (AE004821) 6,7-dimethyl-8-ribityllumazine synthase [Pseudomonas aeruginosa PAO1]
                           158
                           99.99
                           99.99
                           0
                           771.0
     

     
     
183538
                           gb|AAN66144.1|AE016242_12
                           (AE016776) riboflavin synthase, beta subunit [Pseudomonas putida KT2440]
                           158
                           94.93
                           98.73
                           0
                           745.0
     

     
     
183539
                           gb|AAO54235.1|
                           (AE016858) 6,7-dimethyl-8-ribityllumazine synthase [Pseudomonas syringae pv. tomato str. DC3000]
                           158
                           89.87
                           96.83
                           0
                           710.0
     

     
     
183540
                           dbj|BAC44852.1|
                           (AB065118) lumazine synthase [Photobacterium phosphoreum]
                           159
                           67.29
                           84.27
                           4
                           556.0
     

     






      

          
GC ORFID: 47514How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4053Glimmer Score: 

          
Start: 3962052Stop: 3961576

          
Length: 477


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4053 translation of PA4053Homolog Bit Score 301.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5265 (ORF: BLASTX 278.0), t_PA4053 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCTGAAGACCATCGAAGGTACCTTCATTGCTCCCAAAGGCCGCTACGCCCTGGTGGTCGGCCGCTTC 
AACAGCTTCGTCGTGGAAAGCCTGGTCAGCGGCGCCGTCGACGCCCTGGTCCGCCACGGCGTGGCTGAAAGC 
GAGATCACCATCATCCGCGCCCCGGGTGCCTTCGAGATCCCGCTGGTGACCCAGAAGGTCGCCCAGCAAGGC 
GGCTTCGACGCCATCATCGCCCTCGGCGCGGTGATCCGTGGCGGCACCCCGCACTTCGAATACGTGGCCGGC 
GAGTGCACCAAGGGCCTGGCCCAGGTGTCCCTGCAGTTCGGCATCCCGGTCGCCTTCGGCGTCCTCACCGTC 
GACTCCATCGAGCAGGCCATCGAGCGCTCCGGCACCAAGGCCGGCAACAAGGGCGCCGAAGCCGCGCTGTCG 
GCCCTGGAAATGGTCAGCCTGCTGGCGCAGTTGGAGGCCAAGTGA