ViewGene
Locus Name:
GeneID:
Location:

GeneID:4511
TrivialName: PA14_11370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11370
PAO1 Ortholog Locus:PA4058
Sequence Length:471
Protein Length:156
Start: 987788
Stop: 987318
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07445.1|AE004822_5 (AE004822) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 155/156 (99%), Positives = 155/156 (99%)
Sequence:
ATGGAGCAGCCCATGACCCTGCGCTCGATCGCCCTGCTGGCCGTCCTTCTCCTCGCCGCTTGTTCCAGCGAC
AAGCCGAAGCCTGCGCCAACGCCGCAAGCTTCGCGCAGCGTGACCATGGTCGAGCCGGTGCTGCCGGCCCAC
CTGCGCGAGCTGAGCGGAACGCTGAGCAGCATCCAGGGCAGCCTGCCACGCGGCAGCGAGGTGCAGATGGCA
CTGCTGGTGATCGACGAGCGCGACCGCCCACAGCGGCTGCTGGCCAGCGAGACGGTGCTGGCCACCGGCGAA
CTCATGCCCTTCCGCCTGCCGTTCAACCCCGAGTCCTTCCCGCCGGCCGGTGGCGCGCTGCGCGTCGAACTG
CACGCGCGGGTGATCCAGTCCGGCCAGTTGGCCTGGCGCCTGCATCCGTTGCGGATCGCCCAGCCGACCACC
CAGTCCCTCGGCGAACTGCGCCTGGTACGCGCGCCGTGA
Translation:
MEQPMTLRSIALLAVLLLAACSSDKPKPAPTPQASRSVTMVEPVLPAHLRELSGTLSSIQGSLPRGSEVQMA
LLVIDERDRPQRLLASETVLATGELMPFRLPFNPESFPPAGGALRVELHARVIQSGQLAWRLHPLRIAQPTT
QSLGELRLVRAP*
AnnotationID:4517GeneID:4511
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 06:06:25
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA4058
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54230.1| (AE016858) lipoprotein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 149

 Score =  125 bits (313), Expect = 1e-28
 Identities = 76/157 (48%), Positives = 103/157 (65%), Gaps = 13/157 (8%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9023




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26165




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36813




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4511_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4511
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6866
                           PA4058_tr
                           translation of PA4058
                           156
                           99.35
                           99.35
                           0
                           772.0
     

     
     
183534
                           gb|AAG07445.1|AE004822_5
                           (AE004822) hypothetical protein PA4058 [Pseudomonas aeruginosa PAO1]
                           156
                           99.35
                           99.35
                           0
                           772.0
     

     
     
183536
                           gb|AAO54230.1|
                           (AE016858) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           161
                           47.20
                           63.97
                           17
                           328.0
     

     
     
183535
                           gb|AAN66139.1|AE016242_7
                           (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440]
                           202
                           42.07
                           50.99
                           54
                           369.0
     

     






      

          
GC ORFID: 47513How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4058Glimmer Score: 

          
Start: 3966149Stop: 3966619

          
Length: 471


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4058 translation of PA4058Homolog Bit Score 301.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5829 (ORF: BLASTX 124.0), t_PA4058 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAGCAGCCCATGACCCTGCGCTCGATCGCCCTGCTGGCCGTCCTTCTCCTCGCCGCTTGTTCCAGCGAC 
AAGCCGAAGCCTGCGCCAACGCCGCAAGCTTCGCGCAGCGTGACCATGGTCGAGCCGGTGCTGCCGGCCCAC 
CTGCGCGAGCTGAGCGGAACGCTGAGCAGCATCCAGGGCAGCCTGCCACGCGGCAGCGAGGTGCAGATGGCA 
CTGCTGGTGATCGACGAGCGCGACCGCCCACAGCGGCTGCTGGCCAGCGAGACGGTGCTGGCCACCGGCGAA 
CTCATGCCCTTCCGCCTGCCGTTCAACCCCGAGTCCTTCCCGCCGGCCGGTGGCGCGCTGCGCGTCGAACTG 
CACGCGCGGGTGATCCAGTCCGGCCAGTTGGCCTGGCGCCTGCATCCGTTGCGGATCGCCCAGCCGACCACC 
CAGTCCCTCGGCGAACTGCGCCTGGTACGCGCGCCGTGA