ViewGene
Locus Name:
GeneID:
Location:

GeneID:4510
TrivialName: PA14_11750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11750
PAO1 Ortholog Locus:PA4026
Sequence Length:462
Protein Length:153
Start: 1018351
Stop: 1017890
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07413.1|AE004819_6 (AE004819) probable acetyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 153/153 (100%), Positives = 153/153 (100%)
Sequence:
ATGCGAATCGTGCAAGCCACCCTCGAACACCTCGACCTGCTGGCGCCGCTGTTCGTCAAGTACCGCGAATTC
TACGGCATGCTCTCCTACCCCGAGTCCTCGCGGAAATTCCTCGAGAAACGCCTGCGCCGCAAGGAGTCGGTG
ATCTACCTGGCGCTGGCCGACGAAGAAGACCGGCTGCTCGGTTTCTGCCAGCTCTATCCGAGCTTCTCCTCG
CTGTCGCTCAAGCGCGTCTGGATCCTCAACGACATCTACGTCGCCGAGGAGGCGCGCCGGCAACTGGTCGCC
GACCACCTGCTGCAACACGCCAAGCAGATGGCCCGGGAAACCCATGCGGTGCGCATGCGTGTCTCCACCAGC
GTCGACAACGAGGTAGCGCAGAAAGTCTACGAGTCGATCGGCTTCCGCGAAGACCAGGAGTTCAAGAACTAC
ACCCTGCCGATCAGCGACGAACTAAGCTGA
Translation:
MRIVQATLEHLDLLAPLFVKYREFYGMLSYPESSRKFLEKRLRRKESVIYLALADEEDRLLGFCQLYPSFSS
LSLKRVWILNDIYVAEEARRQLVADHLLQHAKQMARETHAVRMRVSTSVDNEVAQKVYESIGFREDQEFKNY
TLPISDELS*
AnnotationID:4516GeneID:4510
AnnotatorUID: urbach
Modification Date/Time: 2004-09-29 14:02:29
Gene Name:
Confidence Code:3
GeneProduct:probable acetyltransferase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00583,KOG3216
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|25558 pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This
family contains proteins with N-acetyltransferase functions
Length = 82
Score = 58.7 bits (142), Expect = 5e-10
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 3/85 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9021




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26163




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4510
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6865
                           PA4026_tr
                           translation of PA4026
                           153
                           99.99
                           99.99
                           0
                           770.0
     

     
     
183525
                           gb|AAG07413.1|AE004819_6
                           (AE004819) probable acetyltransferase [Pseudomonas aeruginosa PAO1]
                           153
                           99.99
                           99.99
                           0
                           770.0
     

     
     
183527
                           gb|AAN66168.1|AE016244_9
                           (AE016776) acetyltransferase, GNAT family [Pseudomonas putida KT2440]
                           154
                           77.27
                           88.96
                           3
                           616.0
     

     
     
183526
                           gb|AAO54267.1|
                           (AE016858) acetyltransferase, GNAT family [Pseudomonas syringae pv. tomato str. DC3000]
                           158
                           74.68
                           87.97
                           7
                           622.0
     

     
     
183529
                           gb|AAP26103.1|
                           (AE017031) acetyltransferase, GNAT family [Bacillus anthracis str. Ames]
                           153
                           41.83
                           58.82
                           7
                           292.0
     

     






      

          
GC ORFID: 47512How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4026Glimmer Score: 

          
Start: 3935586Stop: 3936047

          
Length: 462


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4026 translation of PA4026Homolog Bit Score 301.0

          
Other Homologs:  t_PA4026 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGAATCGTGCAAGCCACCCTCGAACACCTCGACCTGCTGGCGCCGCTGTTCGTCAAGTACCGCGAATTC 
TACGGCATGCTCTCCTACCCCGAGTCCTCGCGGAAATTCCTCGAGAAACGCCTGCGCCGCAAGGAGTCGGTG 
ATCTACCTGGCGCTGGCCGACGAAGAAGACCGGCTGCTCGGTTTCTGCCAGCTCTATCCGAGCTTCTCCTCG 
CTGTCGCTCAAGCGCGTCTGGATCCTCAACGACATCTACGTCGCCGAGGAGGCGCGCCGGCAACTGGTCGCC 
GACCACCTGCTGCAACACGCCAAGCAGATGGCCCGGGAAACCCATGCGGTGCGCATGCGTGTCTCCACCAGC 
GTCGACAACGAGGTAGCGCAGAAAGTCTACGAGTCGATCGGCTTCCGCGAAGACCAGGAGTTCAAGAACTAC 
ACCCTGCCGATCAGCGACGAACTAAGCTGA