ViewGene
Locus Name:
GeneID:
Location:

GeneID:451
TrivialName: PA14_39910
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39910
PAO1 Ortholog Locus:PA1903
Sequence Length:1884
Protein Length:627
Start: 3558862
Stop: 3556979
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07601.1|AE004838_5 (AE004838) phenazine biosynthesis protein PhzE [Pseudomonas aeruginosa PAO1]
Identities = 622/627 (99%), Positives = 623/627 (99%)
Sequence:
ATGAACGCCCTGCCCACATCGCTGTTGCAGCGCCTGCTCGAACGGCCGGCGCCGTTCGCCTTGCTCTACCGC
CCGGAAAGCAATGGCCCGGGCCTGCTCGACGTGATTCGCGGCGAGACGCTCGAACTGCACGGCCTGGCCGAC
CTGCCACTGGACGAGCCCGGCCCGGGCCTGCCGCGCCATGACCTGCTGGCGCTGATTCCCTACCGGCAGATC
GCCGAGCGCGGCTTCGAGGCGCTCGACGACGGCACGCCGCTGCTGGCGCTGAAGGTTCTGGAGCAGGAACTG
CTGCCGTTGGAGCAGGCCCTGGCGCTGCTGCCGAACCAGGCGCTGGAACTGAGCGAGGAAGCTTTCGACCTC
GACGACGAGGcctACGCCGAAGTGGTCGGGCGGGTCATCGCCGACGAGATCGGTCGCGGCGAAGGCGCCAAC
TTCGTGATCAAGCGGCGCTTCCAGGCGCGCATCGACGGCTACGCCACGGCCAGCGCGCTGAGTTTCTTCCGC
CAGTTGCTGCTGCGCGAGAAGGGCGCCTACTGGACCTTCATCGTCCACACCGGCGAACGCACCCTGGTCGGC
GCCTCGCCCGAGCGACACATCAGCGTGCGCGACGGCCTGGCGGTGATGAACCCGATCAGCGGCACCTACCGC
TACCCGCcgGCcgGGccGAACCTGGCCGAGGTCATGGAATtcttcGACAACCGCAAGGAAGccGACGAGCTG
TACATGGTGGTGGACGAGGAGCTGAAGATGATGGCGCGGATCTGCGAGGACGGCGGCCGGGTGCTCGGTCcg
tacatcaAGGAGATGGCGCACCTGGCGCACAcCGAGTACTTCATCGAGGGCCAGACCAGCCGCGACGTGCGC
GAGGTGCTGCGCGAGACGCTGTTCGCCCCGACCGTCACCGGCAGCCCGCTGGAAAGCGCCTGCCGGGTGATC
CGCCGCTACGAGCCGCAGGGTCGCGGCTACTACAGCGGGGTGGCGGCGCTGATCGGCGGCGACGGCCAGGGC
GGGCGCACGCTGGACTCGGCGATCCTGATCCGCACCGCCGAGATCGAGAGCGACGGCCGCCTGCGCATCGGC
GTCGGCTCGACCATCGTGCGTCACTCCGATCCCCTGGGCGAGGCGGCGGAAAGCCGGGCCAAGGCTTCCGGG
CTGATCGCCGCGCTGAAGAGCCAGGCGCCGCAGCGCCTGGGCTCGCACCCGCACGTAGTGGCGGCGCTGGCC
AGCCGCAACGCGCCGATCGCCGACTTCTGGCTGCGCGGCGCCAGCGAGCGCCAGCAGTTGCAGGCCGACCTG
TCCGGACGCGAGGTGCTGATCGTCGACGCCGAGGACACCTTCACCTCGATGATCGCCAAGCAGCTCAAGTCG
CTGGGCCTGACGGTGACCGTGCGCGGCTTCCAGGAGCCGTACTCGTTCGACGGCTACGACCTGGTGATCATG
GGCCCCGGCCCGGGCAACCCCACCGAGATCGGCCAGCCGAAGATCGGCCACCTGCACCTGGCCATCCGTTCG
CTGCTCAGCGAGCGCCGGCCGTTCCTCGCCGTGTGCCTGAGCCACCAGGTGCTGAGCCTGTGCCTGGGCCTG
GACCTGCAACGCCGGCAGGAGCCCAACCAGGGCGTGCAGAAACAGATCGACCTGTTCGGCGCCGCCGAGCGC
GTCGGCTTCTACAACACCTTCGCCGCGCGCGCCCTGCAGGACCGCATCGAGATCCCCGAGGTCGGCCCGATC
GAGATCAGCCGCGACCGCGAGACCGGCGAGGTCCATGCCCTGCGCGGGCCGCGCTTCGCCTCCATGCAATTC
CACCCCGAATCGGTGCTGACCCGCGAGGGTCCGCGCATCATCGCCGACCTGCTGCGCCACGCGCTGGTCGAG
CGGCGGCCCTGA
Translation:
MNALPTSLLQRLLERPAPFALLYRPESNGPGLLDVIRGETLELHGLADLPLDEPGPGLPRHDLLALIPYRQI
AERGFEALDDGTPLLALKVLEQELLPLEQALALLPNQALELSEEAFDLDDEAYAEVVGRVIADEIGRGEGAN
FVIKRRFQARIDGYATASALSFFRQLLLREKGAYWTFIVHTGERTLVGASPERHISVRDGLAVMNPISGTYR
YPPAGPNLAEVMEFFDNRKEADELYMVVDEELKMMARICEDGGRVLGPYIKEMAHLAHTEYFIEGQTSRDVR
EVLRETLFAPTVTGSPLESACRVIRRYEPQGRGYYSGVAALIGGDGQGGRTLDSAILIRTAEIESDGRLRIG
VGSTIVRHSDPLGEAAESRAKASGLIAALKSQAPQRLGSHPHVVAALASRNAPIADFWLRGASERQQLQADL
SGREVLIVDAEDTFTSMIAKQLKSLGLTVTVRGFQEPYSFDGYDLVIMGPGPGNPTEIGQPKIGHLHLAIRS
LLSERRPFLAVCLSHQVLSLCLGLDLQRRQEPNQGVQKQIDLFGAAERVGFYNTFAARALQDRIEIPEVGPI
EISRDRETGEVHALRGPRFASMQFHPESVLTREGPRIIADLLRHALVERRP*
AnnotationID:460GeneID:451
AnnotatorUID: danlee
Modification Date/Time: 2006-03-16 14:02:14
Gene Name:phzE2
Confidence Code:1
GeneProduct:phenazine biosynthesis protein PhzE
Cell Localization:()
Synonyms:PA1903
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Phenazine biosynthesis.
Homology:
corresponds to PA1903 of PAO1 (based on sequence and genomic context).
Structural Features:






   
Genomic Context:
Operon phzA2B2C2D2E2F2G2






   
Comment:


















    ReferenceID:905




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18047




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:451
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
772
                           PA4214_tr
                           translation of PA4214
                           627
                           99.20
                           99.36
                           0
                           3171.0
     

     
     
773
                           PA1903_tr
                           translation of PA1903
                           627
                           99.20
                           99.36
                           0
                           3171.0
     

     
     
33839
                           gb|AAG07601.1|AE004838_5
                           (AE004838) phenazine biosynthesis protein PhzE [Pseudomonas aeruginosa PAO1]
                           627
                           99.20
                           99.36
                           0
                           3171.0
     

     
     
33840
                           gb|AAG05292.1|AE004616_6
                           (AE004616) phenazine biosynthesis protein PhzE [Pseudomonas aeruginosa PAO1]
                           627
                           99.20
                           99.36
                           0
                           3171.0
     

     
     
33841
                           gb|AAC64488.1|
                           (AF005404) PhzE [Pseudomonas aeruginosa]
                           627
                           99.20
                           99.36
                           0
                           3171.0
     

     






      

          
GC ORFID: 43453How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4214Glimmer Score: 

          
Start: 1395049Stop: 1396932

          
Length: 1884


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4214 translation of PA4214Homolog Bit Score 1226.0

          
Other Homologs:  t_PA1903 (ORF: BLASTX 1226.0), t_PA4214 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGCCCTGCCCACATCGCTGTTGCAGCGCCTGCTCGAACGGCCGGCGCCGTTCGCCTTGCTCTACCGC 
CCGGAAAGCAATGGCCCGGGCCTGCTCGACGTGATTCGCGGCGAGACGCTCGAACTGCACGGCCTGGCCGAC 
CTGCCACTGGACGAGCCCGGCCCGGGCCTGCCGCGCCATGACCTGCTGGCGCTGATTCCCTACCGGCAGATC 
GCCGAGCGCGGCTTCGAGGCGCTCGACGACGGCACGCCGCTGCTGGCGCTGAAGGTTCTGGAGCAGGAACTG 
CTGCCGTTGGAGCAGGCCCTGGCGCTGCTGCCGAACCAGGCGCTGGAACTGAGCGAGGAAGCTTTCGACCTC 
GACGACGAGGcctACGCCGAAGTGGTCGGGCGGGTCATCGCCGACGAGATCGGTCGCGGCGAAGGCGCCAAC 
TTCGTGATCAAGCGGCGCTTCCAGGCGCGCATCGACGGCTACGCCACGGCCAGCGCGCTGAGTTTCTTCCGC 
CAGTTGCTGCTGCGCGAGAAGGGCGCCTACTGGACCTTCATCGTCCACACCGGCGAACGCACCCTGGTCGGC 
GCCTCGCCCGAGCGACACATCAGCGTGCGCGACGGCCTGGCGGTGATGAACCCGATCAGCGGCACCTACCGC 
TACCCGCcgGCcgGGccGAACCTGGCCGAGGTCATGGAATtcttcGACAACCGCAAGGAAGccGACGAGCTG 
TACATGGTGGTGGACGAGGAGCTGAAGATGATGGCGCGGATCTGCGAGGACGGCGGCCGGGTGCTCGGTCcg 
tacatcaAGGAGATGGCGCACCTGGCGCACAcCGAGTACTTCATCGAGGGCCAGACCAGCCGCGACGTGCGC 
GAGGTGCTGCGCGAGACGCTGTTCGCCCCGACCGTCACCGGCAGCCCGCTGGAAAGCGCCTGCCGGGTGATC 
CGCCGCTACGAGCCGCAGGGTCGCGGCTACTACAGCGGGGTGGCGGCGCTGATCGGCGGCGACGGCCAGGGC 
GGGCGCACGCTGGACTCGGCGATCCTGATCCGCACCGCCGAGATCGAGAGCGACGGCCGCCTGCGCATCGGC 
GTCGGCTCGACCATCGTGCGTCACTCCGATCCCCTGGGCGAGGCGGCGGAAAGCCGGGCCAAGGCTTCCGGG 
CTGATCGCCGCGCTGAAGAGCCAGGCGCCGCAGCGCCTGGGCTCGCACCCGCACGTAGTGGCGGCGCTGGCC 
AGCCGCAACGCGCCGATCGCCGACTTCTGGCTGCGCGGCGCCAGCGAGCGCCAGCAGTTGCAGGCCGACCTG 
TCCGGACGCGAGGTGCTGATCGTCGACGCCGAGGACACCTTCACCTCGATGATCGCCAAGCAGCTCAAGTCG 
CTGGGCCTGACGGTGACCGTGCGCGGCTTCCAGGAGCCGTACTCGTTCGACGGCTACGACCTGGTGATCATG 
GGCCCCGGCCCGGGCAACCCCACCGAGATCGGCCAGCCGAAGATCGGCCACCTGCACCTGGCCATCCGTTCG 
CTGCTCAGCGAGCGCCGGCCGTTCCTCGCCGTGTGCCTGAGCCACCAGGTGCTGAGCCTGTGCCTGGGCCTG 
GACCTGCAACGCCGGCAGGAGCCCAACCAGGGCGTGCAGAAACAGATCGACCTGTTCGGCGCCGCCGAGCGC 
GTCGGCTTCTACAACACCTTCGCCGCGCGCGCCCTGCAGGACCGCATCGAGATCCCCGAGGTCGGCCCGATC 
GAGATCAGCCGCGACCGCGAGACCGGCGAGGTCCATGCCCTGCGCGGGCCGCGCTTCGCCTCCATGCAATTC 
CACCCCGAATCGGTGCTGACCCGCGAGGGTCCGCGCATCATCGCCGACCTGCTGCGCCACGCGCTGGTCGAG 
CGGCGGCCCTGA