ViewGene
Locus Name:
GeneID:
Location:

GeneID:4507
TrivialName: PA14_52430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52430
PAO1 Ortholog Locus:PA0915
Sequence Length:462
Protein Length:153
Start: 4653174
Stop: 4653635
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04304.1|AE004525_12 (AE004525) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 151/153 (98%), Positives = 151/153 (98%)
Sequence:
ATGCTCAACAACGACGTACTACGCAGCCTGCGCTACCTGCTGGATCTTCCCGATGCACATCTGGCCGAACTG
GCCGCCCCGTTCGGCGAGCAAGTCGAAGCGGACCTGCTCGAGGCTTACCTGAAGAAGGAAGACGAAGACGGC
TTCCAGGCCTGCCCCGACCGCTACCTGGCGCGCTGCCTGGACGGACTGATCATCCAGCGCCGCGGACGCGAC
GAGTCGCGTCCGCTACCGCCGCTGGAGCTGCCGTTGAGCAACAACATGATCCTGAAGAAGCTGCGGGTCGCC
TTCGAACTCAAGGAGGAAGACCTCCATGCCATCCTCGCCAGCGTCGACTTCCCAGTCTCCAAACCCGAGCTG
AGCGCCCTGTTTCGCAAGCCCGGTCACAGCAACTACCGGACCTGCGGCGACCAGTTGCTGCGCAACTTCCTC
AAGGGCCTGACCCTGCGCGTCCGTGGCTGA
Translation:
MLNNDVLRSLRYLLDLPDAHLAELAAPFGEQVEADLLEAYLKKEDEDGFQACPDRYLARCLDGLIIQRRGRD
ESRPLPPLELPLSNNMILKKLRVAFELKEEDLHAILASVDFPVSKPELSALFRKPGHSNYRTCGDQLLRNFL
KGLTLRVRG*
AnnotationID:4513GeneID:4507
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 15:03:24
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0915, yehS
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam07308, COG4807
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam07308, DUF1456, Protein of unknown function (DUF1456). Score: 230, 7e-62
COG4807, Uncharacterized protein conserved in bacteria. Score: 221, 3e-59






   
Genomic Context:






   
Comment:


















    ReferenceID:9015




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26157




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4507
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6862
                           PA0915_tr
                           translation of PA0915
                           153
                           98.69
                           98.69
                           0
                           772.0
     

     
     
183366
                           gb|AAG04304.1|AE004525_12
                           (AE004525) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           153
                           98.69
                           98.69
                           0
                           772.0
     

     
     
183367
                           gb|AAP29971.1|
                           (AY214161) hypothetical protein [Pseudomonas putida]
                           153
                           70.58
                           82.35
                           0
                           553.0
     

     
     
183368
                           gb|AAN66814.1|AE016310_6
                           (AE016778) conserved hypothetical protein [Pseudomonas putida KT2440]
                           153
                           69.93
                           83.00
                           0
                           552.0
     

     
     
183369
                           gb|AAO57479.1|
                           (AE016870) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           153
                           62.09
                           81.04
                           0
                           511.0
     

     






      

          
GC ORFID: 47509How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0915Glimmer Score: 

          
Start: 300733Stop: 300272

          
Length: 462


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0915 translation of PA0915Homolog Bit Score 301.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4772 (ORF: BLASTX 206.0), t_PA0915 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCAACAACGACGTACTACGCAGCCTGCGCTACCTGCTGGATCTTCCCGATGCACATCTGGCCGAACTG 
GCCGCCCCGTTCGGCGAGCAAGTCGAAGCGGACCTGCTCGAGGCTTACCTGAAGAAGGAAGACGAAGACGGC 
TTCCAGGCCTGCCCCGACCGCTACCTGGCGCGCTGCCTGGACGGACTGATCATCCAGCGCCGCGGACGCGAC 
GAGTCGCGTCCGCTACCGCCGCTGGAGCTGCCGTTGAGCAACAACATGATCCTGAAGAAGCTGCGGGTCGCC 
TTCGAACTCAAGGAGGAAGACCTCCATGCCATCCTCGCCAGCGTCGACTTCCCAGTCTCCAAACCCGAGCTG 
AGCGCCCTGTTTCGCAAGCCCGGTCACAGCAACTACCGGACCTGCGGCGACCAGTTGCTGCGCAACTTCCTC 
AAGGGCCTGACCCTGCGCGTCCGTGGCTGA