ViewGene
Locus Name:
GeneID:
Location:

GeneID:4506
TrivialName: PA14_55490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55490
PAO1 Ortholog Locus:PA0681
Sequence Length:450
Protein Length:149
Start: 4940562
Stop: 4940113
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04070.1|AE004503_8 (AE004503) probable type II secretion system protein [Pseudomonas aeruginosa PAO1]
Identities = 149/149 (100%), Positives = 149/149 (100%)
Sequence:
ATGGATGTCGTGCAGTTCAGCTCCAGCCCGAAAGGACATCGGGGACAGCGGGGCTTCACCCTGATCGAGATC
ATGGTGGTGGTGGTGATCCTCGGCATCCTCGCCGCGATGGTGGTGCCCAAGGTGCTCGACCGTCCCGACCAG
GCCCGTGCCACCGCGGCGCGCCAGGACATCTCCGGGCTGATGCAGGCGCTCAAGCTCTACCGCCTCGACCAG
GGCCGCTATCCGAGCCAGGCGCAGGGCTTGAAGGTGCTCGCGGAGCGTCCTGCCGATGCCTCGGCGAGCAAC
TGGCGCTCGTACCTGGAGCGCCTGCCCAACGACCCCTGGGGCAAGCCCTACCAGTACCTGAATCCCGGCGTG
AACGGCGAGATCGACGTGTTCTCCCTCGGCGCCGACGGGCAGCCGGGCGGCGAGGGCATCAACGCCGACATC
GGCTCCTGGCAGCTCTGA
Translation:
MDVVQFSSSPKGHRGQRGFTLIEIMVVVVILGILAAMVVPKVLDRPDQARATAARQDISGLMQALKLYRLDQ
GRYPSQAQGLKVLAERPADASASNWRSYLERLPNDPWGKPYQYLNPGVNGEIDVFSLGADGQPGGEGINADI
GSWQL*
AnnotationID:4512GeneID:4506
AnnotatorUID: danlee
Modification Date/Time: 2006-01-27 13:01:10
Gene Name:
Confidence Code:1
GeneProduct:HxcT pseudopilin
Cell Localization:()
Synonyms:hxcT
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility 
and secretion / Intracellular trafficking and secretion]
CD-Length = 149 residues,  97.3% aligned
Score = 88.2 bits (217), Expect = 6e-19







   
Genomic Context:
Part of the hxcTXYZQRS operon.






   
Comment:


















    ReferenceID:9013




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26155




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38272




  
Author/Investigator(s):
        Ball G, Durand E, Lazdunski A, Filloux A.





  
Title:
        A novel type II secretion system in Pseudomonas aeruginosa.




  
PubMed:
        11985723


MedLine:
        




    
Source:
Mol Microbiol. 2002 Jan;43(2):475-85.






    
Reference Type: 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4506
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6859
                           PA0681_tr
                           translation of PA0681
                           149
                           99.99
                           99.99
                           0
                           771.0
     

     
     
183315
                           gb|AAG04070.1|AE004503_8
                           (AE004503) probable type II secretion system protein [Pseudomonas aeruginosa PAO1]
                           149
                           99.99
                           99.99
                           0
                           771.0
     

     
     
183318
                           dbj|BAB18792.1|
                           (AB050004) GspG [Burkholderia cepacia]
                           154
                           62.33
                           74.67
                           9
                           487.0
     

     
     
183317
                           gb|AAD05177.1|
                           (AF110185) general secretory pathway protein G [Burkholderia pseudomallei]
                           154
                           62.33
                           75.32
                           9
                           491.0
     

     
     
183316
                           gb|AAF36472.1|AF127982_2
                           (AF127982) GspG [Burkholderia cepacia]
                           154
                           62.33
                           74.67
                           9
                           487.0
     

     






      

          
GC ORFID: 47508How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0681Glimmer Score: 

          
Start: 13345Stop: 13794

          
Length: 450


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0681 translation of PA0681Homolog Bit Score 301.0

          
Other Homologs:  t_PA3101 (ORF: BLASTX 162.0), t_PA2675 (ORF: BLASTX 105.0), t_PA0681 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATGTCGTGCAGTTCAGCTCCAGCCCGAAAGGACATCGGGGACAGCGGGGCTTCACCCTGATCGAGATC 
ATGGTGGTGGTGGTGATCCTCGGCATCCTCGCCGCGATGGTGGTGCCCAAGGTGCTCGACCGTCCCGACCAG 
GCCCGTGCCACCGCGGCGCGCCAGGACATCTCCGGGCTGATGCAGGCGCTCAAGCTCTACCGCCTCGACCAG 
GGCCGCTATCCGAGCCAGGCGCAGGGCTTGAAGGTGCTCGCGGAGCGTCCTGCCGATGCCTCGGCGAGCAAC 
TGGCGCTCGTACCTGGAGCGCCTGCCCAACGACCCCTGGGGCAAGCCCTACCAGTACCTGAATCCCGGCGTG 
AACGGCGAGATCGACGTGTTCTCCCTCGGCGCCGACGGGCAGCCGGGCGGCGAGGGCATCAACGCCGACATC 
GGCTCCTGGCAGCTCTGA