ViewGene
Locus Name:
GeneID:
Location:

GeneID:4505
TrivialName: PA14_57460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57460
PAO1 Ortholog Locus:PA4421
Sequence Length:456
Protein Length:151
Start: 5119587
Stop: 5119132
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07809.1|AE004856_20 (AE004856) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 151/151 (100%), Positives = 151/151 (100%)
Sequence:
GTGTTTCGCGGAGCTAATGCCATAAGTCTTGACGCCAAAGGGCGCCTCGCGATGCCGAGTCGGTATCGTGAC
GAGCTCGTTTCGCGTTGTGCCGGCCAGCTCATCGTCACTATCGACGCAGTCGACCCCTGCCTCACCGTTTAC
CCCTTGCCCGAATGGGAACTGATCGAAGCCAAGCTGCGCGAGCTGCCTTCTTTGCGAGAAGAAACGCGGCGC
CTGCAGCGGCTGCTGATCGGTAATGCCGTCGATCTGGAACTGGACGGAAACGGGCGTTTCCTGATTCCGCCG
CGCCTGCGCGAGTACGCCAAGCTGGACAAGCGGGCGATGCTGGTGGGGCAACTGAACAAGTTTCAGTTGTGG
GATGAGGATGCCTGGAACGCCATGGCTGAAGCCGACCTGGCGGCAATCAAACAACCCGGTGGGCTGCCGGAC
GAACTACGCGACCTGATCCTTTGA
Translation:
MFRGANAISLDAKGRLAMPSRYRDELVSRCAGQLIVTIDAVDPCLTVYPLPEWELIEAKLRELPSLREETRR
LQRLLIGNAVDLELDGNGRFLIPPRLREYAKLDKRAMLVGQLNKFQLWDEDAWNAMAEADLAAIKQPGGLPD
ELRDLIL*
AnnotationID:4511GeneID:4505
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 18:06:26
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4421
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15104




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26153




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4505
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6858
                           PA4421_tr
                           translation of PA4421
                           151
                           99.99
                           99.99
                           0
                           773.0
     

     
     
183287
                           gb|AAG07809.1|AE004856_20
                           (AE004856) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           151
                           99.33
                           99.99
                           0
                           770.0
     

     
     
183288
                           gb|AAN66951.1|AE016324_1
                           (AE016779) conserved hypothetical protein TIGR00242 [Pseudomonas putida KT2440]
                           157
                           85.35
                           90.44
                           6
                           694.0
     

     
     
183289
                           gb|AAO57866.1|
                           (AE016871) marZ family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           151
                           84.76
                           94.03
                           0
                           673.0
     

     
     
183303
                           gb|AAO89679.1|
                           (AE016960) conserved hypothetical protein TIGR00242 [Coxiella burnetii RSA 493]
                           153
                           52.94
                           66.66
                           3
                           388.0
     

     






      

          
GC ORFID: 47507How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4421Glimmer Score: 

          
Start: 4383266Stop: 4382811

          
Length: 456


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4421 translation of PA4421Homolog Bit Score 302.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene2037 (ORF: BLASTX 266.0), t_PA4421 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTTTCGCGGAGCTAATGCCATAAGTCTTGACGCCAAAGGGCGCCTCGCGATGCCGAGTCGGTATCGTGAC 
GAGCTCGTTTCGCGTTGTGCCGGCCAGCTCATCGTCACTATCGACGCAGTCGACCCCTGCCTCACCGTTTAC 
CCCTTGCCCGAATGGGAACTGATCGAAGCCAAGCTGCGCGAGCTGCCTTCTTTGCGAGAAGAAACGCGGCGC 
CTGCAGCGGCTGCTGATCGGTAATGCCGTCGATCTGGAACTGGACGGAAACGGGCGTTTCCTGATTCCGCCG 
CGCCTGCGCGAGTACGCCAAGCTGGACAAGCGGGCGATGCTGGTGGGGCAACTGAACAAGTTTCAGTTGTGG 
GATGAGGATGCCTGGAACGCCATGGCTGAAGCCGACCTGGCGGCAATCAAACAACCCGGTGGGCTGCCGGAC 
GAACTACGCGACCTGATCCTTTGA