ViewGene
Locus Name:
GeneID:
Location:

GeneID:4504
TrivialName: PA14_12690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12690
PAO1 Ortholog Locus:PA3956
Sequence Length:435
Protein Length:144
Start: 1088955
Stop: 1088521
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07343.1|AE004813_10 (AE004813) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 142/144 (98%), Positives = 142/144 (98%)
Sequence:
ATGAGCGACGAATCGGCCAACCCCAGCTGCATTTCCCACCTGTCCATCGGCACCAACGACTTTCCCCGTGCC
CGAGCCTTCTACGACGCGGTGATGGCCGCCCTCGGCTGCAAGGTGATCCTCGAATACCCCGGCGCCGTGGCC
TACGGCAAGCTCTATCCGGAGTTCTGGGTGCAGGCGCCGATCGACGGCCGTCCCGCCAGCGTCGGCAACGGC
AGCCACGTCGGCCTCTTCGCCGACAGCAAGGCCCAGGTCGACGCCTTCCACGCCGCGGCCCTGGCCGCCGGC
GCAGACGACGAGGGCGCGCCGGGCCCGCGTCCGCTTTACGGCGAGCCCTACTACGGGTGTTTCATCCGCGAC
CTCGACGGGCACAAGGTCGAGGCCTCCTACTGGGACATGAGCCAGGGCTTCGACGCCCACGACCACGCCCAC
TGA
Translation:
MSDESANPSCISHLSIGTNDFPRARAFYDAVMAALGCKVILEYPGAVAYGKLYPEFWVQAPIDGRPASVGNG
SHVGLFADSKAQVDAFHAAALAAGADDEGAPGPRPLYGEPYYGCFIRDLDGHKVEASYWDMSQGFDAHDHAH
*
AnnotationID:4510GeneID:4504
AnnotatorUID: urbach
Modification Date/Time: 2004-05-21 16:04:00
Gene Name:
Confidence Code:3
GeneProduct:possible glyoxalase
Cell Localization:()
Synonyms:PA3956
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00903, COG0346
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|25648 pfam00903, Glyoxalase, Glyoxalase/Bleomycin
resistance protein/Dioxygenase superfamily
Length = 120
Score = 44.7 bits (105), Expect = 8e-06
Identities = 33/124 (26%), Positives = 46/124 (37%), Gaps = 13/124 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9009




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26151




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4504
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6857
                           PA3956_tr
                           translation of PA3956
                           144
                           98.61
                           98.61
                           0
                           773.0
     

     
     
183274
                           gb|AAG07343.1|AE004813_10
                           (AE004813) hypothetical protein PA3956 [Pseudomonas aeruginosa PAO1]
                           144
                           98.61
                           98.61
                           0
                           773.0
     

     
     
183281
                           gb|AAO10854.1|AE016805_111
                           (AE016805) Lactoylglutathione lyase [Vibrio vulnificus CMCP6]
                           145
                           37.24
                           52.41
                           24
                           257.0
     

     
     
183279
                           gb|AAO10903.1|AE016805_160
                           (AE016805) Lactoylglutathione lyase [Vibrio vulnificus CMCP6]
                           145
                           37.24
                           52.41
                           24
                           261.0
     

     
     
183275
                           dbj|BAC49058.1|
                           (AP005949) blr3793 [Bradyrhizobium japonicum USDA 110]
                           144
                           36.80
                           52.08
                           19
                           266.0
     

     






      

          
GC ORFID: 47506How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3956Glimmer Score: 

          
Start: 3864983Stop: 3865417

          
Length: 435


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3956 translation of PA3956Homolog Bit Score 302.0

          
Other Homologs:  t_PA3956 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGACGAATCGGCCAACCCCAGCTGCATTTCCCACCTGTCCATCGGCACCAACGACTTTCCCCGTGCC 
CGAGCCTTCTACGACGCGGTGATGGCCGCCCTCGGCTGCAAGGTGATCCTCGAATACCCCGGCGCCGTGGCC 
TACGGCAAGCTCTATCCGGAGTTCTGGGTGCAGGCGCCGATCGACGGCCGTCCCGCCAGCGTCGGCAACGGC 
AGCCACGTCGGCCTCTTCGCCGACAGCAAGGCCCAGGTCGACGCCTTCCACGCCGCGGCCCTGGCCGCCGGC 
GCAGACGACGAGGGCGCGCCGGGCCCGCGTCCGCTTTACGGCGAGCCCTACTACGGGTGTTTCATCCGCGAC 
CTCGACGGGCACAAGGTCGAGGCCTCCTACTGGGACATGAGCCAGGGCTTCGACGCCCACGACCACGCCCAC 
TGA